HsaEX0073957 @ hg38
Exon Skipping
Gene
ENSG00000198453 | ZNF568
Description
zinc finger protein 568 [Source:HGNC Symbol;Acc:HGNC:25392]
Coordinates
chr19:36936746-36950645:+
Coord C1 exon
chr19:36936746-36936868
Coord A exon
chr19:36937147-36937242
Coord C2 exon
chr19:36949512-36950645
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTGCTATTTCTTGTAATAGGCT
3' ss Score
7.23
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GAAACAGTGACATTTAAGGATGTGGCTGTTGACCTTACCCAGGAGGAGTGGGAGCAAATGAAACCTGCTCAAAGAAACTTGTATCGAGATGTGATGCTGGAGAACTACAGCAACCTAGTCACA
Seq A exon
GCTGTCAAGTCACCAAACCGGATGTGATATTCAAGTTGGAGCAAGAAGAGGAGCCCTGGGTGATGGAGGAAGAAATGTTTGGGAGGCACTGTCCAG
Seq C2 exon
AAGTTTGGGAAGTTGATGAACAGATCAAGAAGCAACAGGAAACACTTGTGAGGAAAGTCACATCCATCTCCAAGAAAATTCTGATAAAGGAAAAAGTCATTGAATGTAAAAAAGTTGCGAAAATATTTCCTCTGAGTTCAGACATTGTTACTTCAAGACAAAGCTTCTATGACTGTGACTCACTTGATAAGGGTTTGGAACATAATTTAGACTTACTTAGATATGAGAAAGGCTGTGTAAGAGAGAAACAGAGTAATGAGTTTGGGAAACCATTTTACCATTGTGCATCCTATGTTGTAACCCCCTTTAAGTGTAATCAGTGTGGACAAGACTTCAGTCATAAATTTGACCTCATTAGACATGAGCGAATTCATGCTGGAGAGAAACCTTACGAATGTAAAGAATGTGGAAAAGCCTTCAGTAGGAAGGAAAATCTTATTACACATCAGAAAATTCATACTGGGGAAAAACCGTATAAGTGTAATGAATGTGGAAAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198453_MULTIEX1-7/8=6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.064 C2=0.047
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGTTGACCTTACCCAG
R:
GGAGATGGATGTGACTTTCCTCAC
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development