HsaEX0074000 @ hg19
Exon Skipping
Gene
ENSG00000245680 | ZNF585B
Description
zinc finger protein 585B [Source:HGNC Symbol;Acc:30948]
Coordinates
chr19:37676129-37681052:-
Coord C1 exon
chr19:37680926-37681052
Coord A exon
chr19:37680563-37680655
Coord C2 exon
chr19:37676129-37678146
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTATCATTTCCCATGAACAGGGT
3' ss Score
8.16
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGATCAGTGTCCTTCAGGGATGTGGCTATCGATTTCAGCAGAGAGGAATGGCGGCACCTGGACCTTTCTCAGAGAAACCTGTACCGGGATGTGATGCTGGAGACCTACAGCCACCTGCTCTCAGTAG
Seq A exon
GGTATCAAGTTCCTAAACCAGAGGTGGTCATGTTGGAGCAAGGAAAGGAACCATGGGCACTGCAGGGTGAGAGGCCACGTCACAGCTGCCCAG
Seq C2 exon
GAGAGAAATTATGGGACCATAATCAACATAGAAAAATCATCGGTTATAAACCAGCTTCCTCTCAAGATCAAAAAATTTATTCTGGGGAAAAATCCTATGAGTGTGCTGAATTTGGAAAGAGCTTCACCTGGAAGTCACAGTTCAAGGTACATCTGAAAGTTCCTACAGGAGAAAAACTCTATGTATGTATTGAATGTGGGAGGGCTTTTGTACAGAAGCCAGAATTCATCACACATCAGAAAACCCATATGAGAGAGAAGCCCTATAAGTGCAATGAATGTGGAAAATCCTTTTTTCAAGTATCGTCTCTTTTCAGGCATCACAGAATTCATACCGGAGAAAAACTATATGAATGTAGTGAATGTGGGAAAGGTTTCCCTTATAACTCAGATCTCAGTATACATGAGAAAATTCATACTGGAGAGAGACACCATGAATGCACTGACTGTGGCAAAGCGTTCACACAAAAGTCCACACTCAAGATTCATCAGAAAATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245680_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.219 C2=0.037
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF097235=Zn-ribbon_8=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF0214814=zf-UBP=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF097235=Zn-ribbon_8=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACCGGGATGTGATGCTG
R:
TCCAGGTGAAGCTCTTTCCAA
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)