BtaEX0001346 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr18:47468645-47473766:-
Coord C1 exon
chr18:47473625-47473766
Coord A exon
chr18:47469968-47470060
Coord C2 exon
chr18:47468645-47468712
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTATCATTTCTCATGAACAGGAT
3' ss Score
9.25
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AATGTGCCCTTACAGGGATCAGTGTCCTTCAGGGACGTAGCTGTAGATTTCAGCAGAGAGGAGTGGCAGCAATTGGACCTTGATCAGAAAAACCTGTACCGGGATGTGATGCTGGAGACCTGTAGCCACTTGCTCTCAATAG
Seq A exon
GATATCAAGTTCCTGAAACCAAGGTTTTCATGTTGGAACAAGGAAAGGAGCCATGGGCACTGCAAGGTGAGGGCCCATATCAGAGCTGTCCAG
Seq C2 exon
AAGAATTGTGGCAGATTGGTGACCAGATAGAGAGCTATCATCAGAGAGAAAACAGATCTTTAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040063-'1-3,'1-1,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=85.4)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGATCAGTGTCCTTCAGGG
R:
GATAGCTCTCTATCTGGTCACCA
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development