MmuEX6075450 @ mm10
Exon Skipping
Gene
ENSMUSG00000061544 | Zfp229
Description
zinc finger protein 229 [Source:MGI Symbol;Acc:MGI:2679295]
Coordinates
chr17:21742496-21745061:+
Coord C1 exon
chr17:21742496-21742622
Coord A exon
chr17:21743859-21743957
Coord C2 exon
chr17:21745047-21745061
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCCAATTTCTAATACGCAGGTA
3' ss Score
6.17
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGTCTGTTGACATTCCGAGATGTGGCTGTGGACTTCTCCCAGGAGGAGTGGGAATGCCTGGACTCTGCTCAGAGGGCTTTGTACATTGGTGTAATGTTAGAGAATTATAGCAACCTGGTCTCTGTGG
Seq A exon
GTATTATTGTGTGCAAGGCAGACCTGGTCCCCCATCTGGAGCAAATCTATATACCCTGGAACGTGAAGATAAAAGAGATGGTGGCTAAACCAGGTAGAG
Seq C2 exon
AGAGCTATCGAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061544-'7-24,'7-19,15-24=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types