RnoEX0074411 @ rn6

Exon Skipping

Gene

ENSRNOG00000001099 | Rbak

Description

RB-associated KRAB zinc finger [Source:RGD Symbol;Acc:1562875]

Coordinates

chr12:13438059-13442286:+

Coord C1 exon

chr12:13438059-13438185

Coord A exon

chr12:13438512-13438607

Coord C2 exon

chr12:13439591-13442286

Length

96 bp

Sequences

Splice sites

3' ss Seq

CCTCCTTTTCTTGTTAACAGGGT

3' ss Score

10.2

5' ss Seq

TGGGTGAGT

5' ss Score

8.73

Exon sequences

Seq C1 exon

GGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACTCTGAGGAGAGGACGACCTACCGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGG

Seq A exon

GGTATGATGTCACCAAGCCAAACGTGATTATTAAGTTGGAACAGGGAGAAGAACCCTGGACAGTGGAAGGTGACCGCCATGCTAAGAGGCATTTGG

Seq C2 exon

AAATCAAAAAAGTTGATGACCCCAGAGAAGGAATCCAGGAAAATGGCGAGAAACATCTGCAGTGCGGTGATGATCTCCACAGCTGGAGAGCGGAGAAGGGGGACGAGTTTGATGAAGCCTGCACCCTAGAACCACCCCTCATTTCCCCCAGCTCAGGCGCTCACAGCTGTGTCTCCTGTGGGAAGACTTTGGAATCTGTTACAGAACTGATTTGCAGTGATGGAAGCTATGCAGTAGAGAAGCCCGACAAGTGTTTTGAGTGTGGGAAAGGGTACAGAGAAAACCCTGAGGACCTTAACCAAAGTGAGGGTAACTCTTCTGAACGTGACGAAAGTATTCTGCAGAAAATCACCATTTTGGAGAAACCCTTTGACTATGAGTGCTTGGAAGCCTTAGACAGGGAAAGTGTTTTCATGGCTCATGAGAGAGCTTACATGGGGGAGAAGCCCTATGAATGGAACGGTTCTGGACCAGACTTCATCCAGATATCAGACTTCAGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000001099-'3-5,'3-4,4-5

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.134 A=0.295 C2=0.078

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF0009621=zf-C2H2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1)

Main Inclusion Isoform:

ENSRNOP00000001455