HsaEX6007002 @ hg19

Exon Skipping

Gene

ENSG00000146587 | RBAK

Description

RB-associated KRAB zinc finger [Source:HGNC Symbol;Acc:17680]

Coordinates

chr7:5096926-5103386:+

Coord C1 exon

chr7:5096926-5097052

Coord A exon

chr7:5097315-5097410

Coord C2 exon

chr7:5103326-5103386

Length

96 bp

Sequences

Splice sites

3' ss Seq

CCTTCTTTTCCCATTAACAGGAT

3' ss Score

11.2

5' ss Seq

CAGGTAAGT

5' ss Score

10.86

Exon sequences

Seq C1 exon

GGGCCAGTGTCATTCAAAGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAGCTGGACCCTGATGAGAAGATAACTTACAGGGATGTGATGTTGGAGAACTATAGCCATCTAGTTTCTGTGG

Seq A exon

GATATGATACCACCAAGCCAAACGTCATCATTAAGTTGGAGCAGGGAGAGGAGCCGTGGATAATGGGAGGTGAATTTCCATGTCAACATAGTCCAG

Seq C2 exon

AAGCCTGGAGAGTTGATGACCTGATAGAGAGAATCCAAGAAAACGAAGACAAACATTCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000146587-'7-12,'7-10,8-12=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.037 A=0.147 C2=0.075

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF0013017=C1_1=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=4.1)

Main Inclusion Isoform:

ENSP00000275423