HsaEX6007002 @ hg38

Exon Skipping

Gene

ENSG00000146587 | RBAK

Description

RB associated KRAB zinc finger [Source:HGNC Symbol;Acc:HGNC:17680]

Coordinates

chr7:5057295-5067257:+

Coord C1 exon

chr7:5057295-5057421

Coord A exon

chr7:5057684-5057779

Coord C2 exon

chr7:5063695-5067257

Length

96 bp

Sequences

Splice sites

3' ss Seq

CCTTCTTTTCCCATTAACAGGAT

3' ss Score

11.2

5' ss Seq

CAGGTAAGT

5' ss Score

10.86

Exon sequences

Seq C1 exon

GGGCCAGTGTCATTCAAAGATGTGGCTGTGGATTTCACCCAGGAGGAGTGGCAGCAGCTGGACCCTGATGAGAAGATAACTTACAGGGATGTGATGTTGGAGAACTATAGCCATCTAGTTTCTGTGG

Seq A exon

GATATGATACCACCAAGCCAAACGTCATCATTAAGTTGGAGCAGGGAGAGGAGCCGTGGATAATGGGAGGTGAATTTCCATGTCAACATAGTCCAG

Seq C2 exon

AAGCCTGGAGAGTTGATGACCTGATAGAGAGAATCCAAGAAAACGAAGACAAACATTCAAGGCAAGCTGCTTGTATCAATAGCAAAACCCTGACTGAAGAGAAAGAGAATACATTTAGTCAAATTTACATGGAAACAAGCCTTGTTCCTTCAAGCATAATAGCTCATAATTGTGTCTCATGTGGAAAGAATTTAGAATCTATTTCGCAATTAATTAGTAGTGATGGAAGCTATGCTAGGACAAAACCTGATGAGTGTAATGAATGTGGGAAAACATATCATGGAGAGAAAATGTGTGAATTTAATCAAAATGGGGATACCTATTCTCACAATGAAGAAAATATTCTTCAGAAAATTAGTATTTTGGAGAAACCCTTTGAATATAATGAATGCATGGAAGCCTTAGACAATGAGGCTGTTTTTATTGCTCATAAGAGAGCTTACATAGGGGAGAAGCCCTATGAGTGGAATGATTCTGGACCAGACTTCATACAGATGTCA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000146587-'5-8,'5-7,6-8=AN

Average complexity

A_NA

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.061 C2=0.050

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1)

Main Inclusion Isoform:

ENSP00000275423