BtaEX6111064 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010291 | RBAK
Description
Bos taurus RB-associated KRAB zinc finger (RBAK), mRNA. [Source:RefSeq mRNA;Acc:NM_001191256]
Coordinates
chr25:39087151-39089918:+
Coord C1 exon
chr25:39087151-39087277
Coord A exon
chr25:39087545-39087640
Coord C2 exon
chr25:39087806-39089918
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGACTCTTTCTCATTCACAGGGT
3' ss Score
10.38
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGGTCAGTATCGTTCAGGGATGTGGCTGTGGACTTCACCCAGGAGGAGTGGCAGCAGCTAGACCCTGAGGAGAAGATGACCTACAGGGACGTGATGCTGGAGAACTACAGCCACCTTGTCTCCGTGG
Seq A exon
GGTATGACAGCACCAAACCCAATGTGATCATCAAGTTGGAGCAAGGAGAAGAGCCATGGGTAGTAGACAGCAAGTTCCTACAGCAGCAGCATTCAG
Seq C2 exon
AAAAAGTCTGGAAAGTTGGTGACTTGATAGAGAGAATCCAAGAAAATGGAGATGAATGTTCAAGGCAAGCTGTTTCTATCAACAGCAGAACCCTGACTGAGGAGAGAGAGGATGCGTTTGATAAAACATATAATGTGGAAACAAGTCTTGCTCCGTTAAATCTAACGTCTTATAATTGTATCTCATGTGGGAAGACTTTGGAATCTACTTCAGAATTAATTATTAGTGATGGAAGCTATGCAAGAAAGAAACCTGATGAGTGTAATGAATGTGGAAAAATGTATGGAGAGAAACTCTATGAATTTCATCAAAATGGGGAAGCCTGTTCTCAAAATGAAGAAAGTATTCAGAAAATTAGTATTTTGGAGAAACCCTTTGAATATAATGGATGCACAGAAGCCTTAGACAATGAAGCCGTTTTTATTACGCATAAGAGCACTTATATGGGGGAGAAGTGCTATGAGTGGAATGATTCTAGACCAGACTTCATCCAGATGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010291-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.030 C2=0.024
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTAGACCCTGAGGAGAA
R:
TCTCCTCAGTCAGGGTTCTGC
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]