HsaEX0074027 @ hg38
Exon Skipping
Gene
ENSG00000198182 | ZNF607
Description
zinc finger protein 607 [Source:HGNC Symbol;Acc:HGNC:28192]
Coordinates
chr19:37709696-37719188:-
Coord C1 exon
chr19:37719015-37719188
Coord A exon
chr19:37711610-37711692
Coord C2 exon
chr19:37709696-37709822
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAGGTCTTCTCTTCTTTCAGGTC
3' ss Score
10.6
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
ATTGACCCTTGGCTCCAGGTTCCCTGCTGCTTCCTGTGCCTTCCTCAGCCTAGTACGACTACAACAGAGAAATGGTCCCAATGGGAAATCAGATACTGAGTCTTAGATGAAGATTTCCAGTGAGAAGAAACAGATAGGATGAGAAGCTTAGAAGAGTAATTGCCCTTAAGAAAG
Seq A exon
GTCTTGGTTCTTTTGACTTTGCTCTTCTGGTAGAGAAACGCCAAGGACTGATCAACTCTTGCCAGTCTCAAACCATGTCCTAT
Seq C2 exon
GGATCAATAACATTCGGGGATGTGGCCATAGACTTCTCTCATCAGGAGTGGGAATATCTCAGCCTGGTTCAGAAGACCTTGTACCAGGAGGTGATGATGGAGAACTATGACAACTTAGTCTCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198182-'1-5,'1-4,2-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCCTCAGCCTAGTACGA
R:
TCTATGGCCACATCCCCGAAT
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development