BtaEX6081976 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr18:47862388-47872103:+
Coord C1 exon
chr18:47862388-47862549
Coord A exon
chr18:47868199-47868281
Coord C2 exon
chr18:47871977-47872103
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAGTCTTTCTCTTCTCCCAGGTC
3' ss Score
9.07
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TGGAGCCTTACGTCCCACAGACTACCCGGTGACTTTGGCTTCTGGTTCTTTTTCCGTATCTCTTGTTGCAGACTGCGCGTGAGTGGCACCGTCTGAGGAGGAATCCAGCGTGGGTCGCCGCGGAGGCGACTATGCAGACTTAGCCAGAGCCCGCGAGGGACG
Seq A exon
GTCTGGGTTTTCTGGACTCGGCTTTTCTGATAGAGAAGCCCAGAGGACTGATCAGCTCTTACAGGTCTAAAACCATGGCCCAT
Seq C2 exon
GGATCGTTGACATTCAGTGATGTGGCCATAGGATTCTCTCAGCAGGAGTGGGAATGCCTGGACCCTGTTCAGAAGACTTTGTACCGGGATGTGATGATGGAGAACTATGGTAACTTGGTCTCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046367-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTCTGAGGAGGAATCCAG
R:
TCTCCATCATCACATCCCGGT
Band lengths:
178-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]