MmuEX0053702 @ mm9
Exon Skipping
Gene
ENSMUSG00000050855 | Zfp940
Description
zinc finger protein 940 [Source:MGI Symbol;Acc:MGI:2446235]
Coordinates
chr7:30631853-30638667:-
Coord C1 exon
chr7:30638516-30638667
Coord A exon
chr7:30635961-30636036
Coord C2 exon
chr7:30631853-30631979
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCATGGTTCTTTCCCTCTAGCTT
3' ss Score
8.96
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CGCGGTGGACCCTAGGCTTGCTTTATCAGACACACCAGGAAGCCAGTTAGAAGCCGTCTGCATGCCTGCTTGCTGGCTGGGAGCGCACGAAGCTGTGGAGGAGGACAACTGAGGAGCGTGGAGCGTTCCCGAACCCCAAAGAGAATCCCAAT
Seq A exon
CTTTCTCGGGCTCTACTTGGTTGATCGTGGAACCCAGAAGAGAACTACTCAACTCAAGTTTTAAGCCATGGCCCAA
Seq C2 exon
AGACTGATGACGTTCAGAGACGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGAGCCTGGACCAGAGGAGTTTATACAGAGATGTGATGCTGGAGAGCTACAGCCACCTCGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050855_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGAGGACAACTGAGGA
R:
ACTGAGACGAGGTGGCTGTAG
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: