RnoEX0101732 @ rn6
Exon Skipping
Gene
ENSRNOG00000029043 | Zfp84
Description
zinc finger protein 84 [Source:RGD Symbol;Acc:1309815]
Coordinates
chr1:87697005-87704939:+
Coord C1 exon
chr1:87697005-87697095
Coord A exon
chr1:87702730-87702804
Coord C2 exon
chr1:87704421-87704939
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTGCTGTCTTCTCAGGAG
3' ss Score
9.39
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AAGTTGGAGCCGCAGACCAGAATGTAGGATCCCAGCGTCTGAGACCCACCTAGCAGTGGCAGTTTGACCAAGAGGAAGCCTGCCTCGTCCT
Seq A exon
GAGCTGGCCTCATCAACATAGGAATCAAGAAGAGGACTGACTGGTCACTTTTAGGAGTTTCAAATCATGGCTCAT
Seq C2 exon
GTAATGACGTTCAGAGATGTGGCCGTAGACTTCTCTCCCGAGGAGTGGGCGTGTCTGAGCCTGGAACAGAGGAGTCTATACAGAGACGTGATGCTGGAGAACTACAGCCACCTCGTCTCCGTGGGTAAGACTCGACCCTAGACATTCCGGGCTTCCTTATTGGCAGCCACTGACTTTCTTTTTTATAAGAAATGTCAGGGGGTTTTCTGACCTGCGTTTATTCTGGAAAACGGCCCGTGTTTTCTGCAGAGATGGTGTCGTCACTGGGGAAGCCCGTGTTCACCGTCCTCCCAGAATGCGTTGTGCTTTTTCTTTGTCCTTCCTGTCCTTGCTGCACTTCCTTTGTTACCAGGGCACCAGCTCAAACTTTTTGGCTTCTCTTCCGTGTGGTCACTACCTGCCTATATTTTATCTTACACGCAGGACTTTGCATTTATCAACCGCATGTGTTCCCTGTGTTGGAAAAAGAACAAGATGCCTGCGTGGATTTGAGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029043-'8-13,'8-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGGATCCCAGCGTCTGAG
R:
TCTCCAGCATCACGTCTCTGT
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]