MmuEX0053618 @ mm10
Exon Skipping
Gene
ENSMUSG00000011427 | Zfp790
Description
zinc finger protein 790 [Source:MGI Symbol;Acc:MGI:1923431]
Coordinates
chr7:29816114-29824953:+
Coord C1 exon
chr7:29816114-29816289
Coord A exon
chr7:29822980-29823144
Coord C2 exon
chr7:29824830-29824953
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGACCTTCCTCCAAGGAA
3' ss Score
7.96
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
AGGACCCCAGCGCTAAGACCAACCCAGCATTGGCAGTCTGACCAAGAGGAAGCCTCGTCCTGTAGGTGCAAGAGTACGCAATGACAGCCCTGAGCGTGTGTGAGAGAAAGCATAGGGAGGTTAGATTGCATGCGCGGCTGGATCTGGGAGGAGTTGGACGGCAGAGAAACTGCGAG
Seq A exon
GAAGAAAACGGCCTTTGTTCTTGTCCACTTAAATGGTCTGTGGAAAGCCAGCTGCCTCATGGTTCTCTTTCCTGTGCGCTGTCTTCTCAGAAGCTGGCCTCATCGACATAGGAATCAAGACGAGGACTGACTGGCCACTTTTAGGAGTTTCCAATCATGGCCCAC
Seq C2 exon
GTAATGACATTCAGAGATGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGAGCCTGGACCAGAAGAGTTTATACCGAGATGTCATGCTGGAGAACTACAGCCACCTTGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011427_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=97.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTCTGACCAAGAGGAA
R:
TCTCCAGCATGACATCTCGGT
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types