HsaEX6094718 @ hg38
Exon Skipping
Gene
ENSG00000197863 | ZNF790
Description
zinc finger protein 790 [Source:HGNC Symbol;Acc:HGNC:33114]
Coordinates
chr19:36823667-36838384:-
Coord C1 exon
chr19:36838337-36838384
Coord A exon
chr19:36825611-36825692
Coord C2 exon
chr19:36823667-36823790
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTGTGATTCTTTCCTTCTAGCTC
3' ss Score
9.08
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AATAGAAAGATCGCGGAACCTTCCACCATCAAGGGACCGCAGGGCCGG
Seq A exon
CTCTGCTTTCCCAGCACGCTGCCTCACCAAGAAAGAATCCAGAGAAGGACTGGTGGACTTGGAATGTTAAGTCATGGCCCAT
Seq C2 exon
TTGATGATGTTCAGGGATGTGGCTGTAGATTTCTCTCAGGAGGAGTGGGAGTGCCTGGACCTGGAACAGAGGGATTTATATAGAGATGTGATGTTGGAGAACTACAGCAACATGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197863-'2-9,'2-8,6-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=97.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGATCGCGGAACCTTCC
R:
CCAGTGAGACCATGTTGCTGT
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains