HsaEX6094718 @ hg19
Exon Skipping
Gene
ENSG00000197863 | ZNF790
Description
zinc finger protein 790 [Source:HGNC Symbol;Acc:33114]
Coordinates
chr19:37314569-37329284:-
Coord C1 exon
chr19:37329239-37329284
Coord A exon
chr19:37316513-37316594
Coord C2 exon
chr19:37314569-37314692
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTGTGATTCTTTCCTTCTAGCTC
3' ss Score
9.08
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TAGAAAGATCGCGGAACCTTCCACCATCAAGGGACCGCAGGGCCGG
Seq A exon
CTCTGCTTTCCCAGCACGCTGCCTCACCAAGAAAGAATCCAGAGAAGGACTGGTGGACTTGGAATGTTAAGTCATGGCCCAT
Seq C2 exon
TTGATGATGTTCAGGGATGTGGCTGTAGATTTCTCTCAGGAGGAGTGGGAGTGCCTGGACCTGGAACAGAGGGATTTATATAGAGATGTGATGTTGGAGAACTACAGCAACATGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197863-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=97.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGATCGCGGAACCTTCC
R:
CCAGTGAGACCATGTTGCTGT
Band lengths:
169-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)