MmuEX0053702 @ mm10
Exon Skipping
Gene
ENSMUSG00000050855 | Zfp940
Description
zinc finger protein 940 [Source:MGI Symbol;Acc:MGI:2446235]
Coordinates
chr7:29846834-29853669:-
Coord C1 exon
chr7:29853497-29853669
Coord A exon
chr7:29850942-29851017
Coord C2 exon
chr7:29846834-29846960
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCATGGTTCTTTCCCTCTAGCTT
3' ss Score
8.96
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GACTTGGCCAGCGCCGGGTCTCGCGGTGGACCCTAGGCTTGCTTTATCAGACACACCAGGAAGCCAGTTAGAAGCCGTCTGCATGCCTGCTTGCTGGCTGGGAGCGCACGAAGCTGTGGAGGAGGACAACTGAGGAGCGTGGAGCGTTCCCGAACCCCAAAGAGAATCCCAAT
Seq A exon
CTTTCTCGGGCTCTACTTGGTTGATCGTGGAACCCAGAAGAGAACTACTCAACTCAAGTTTTAAGCCATGGCCCAA
Seq C2 exon
AGACTGATGACGTTCAGAGACGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGAGCCTGGACCAGAGGAGTTTATACAGAGATGTGATGCTGGAGAGCTACAGCCACCTCGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050855-'0-6,'0-4,7-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGGAGGACAACTGAGGA
R:
ACTGAGACGAGGTGGCTGTAG
Band lengths:
183-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types