HsaEX0074100 @ hg19
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:17894]
Coordinates
chr2:71582849-71590321:+
Coord C1 exon
chr2:71582849-71582910
Coord A exon
chr2:71588775-71588825
Coord C2 exon
chr2:71590283-71590321
Length
51 bp
Sequences
Splice sites
3' ss Seq
TAACTTTTTTGTCTTCACAGTTT
3' ss Score
8.95
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GATTGGATTCAGCATCAAAATACATCTACTCATATTGAGAGCTGTCGACAGTTACGTCAACA
Seq A exon
TTTGTCCTCTCATAATTAAAAGATGCTCCAGACAATATATCTATTCTCAAA
Seq C2 exon
GTATCCTGATTGGAATCCTGAGATCCTCCCATCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=0.333 C2=0.643
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGATTCAGCATCAAAATACATC
R:
TTCTCGATGGGAGGATCTCAGG
Band lengths:
100-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)