HsaEX0074100 @ hg38
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71355719-71363191:+
Coord C1 exon
chr2:71355719-71355780
Coord A exon
chr2:71361645-71361695
Coord C2 exon
chr2:71363153-71363191
Length
51 bp
Sequences
Splice sites
3' ss Seq
TAACTTTTTTGTCTTCACAGTTT
3' ss Score
8.95
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GATTGGATTCAGCATCAAAATACATCTACTCATATTGAGAGCTGTCGACAGTTACGTCAACA
Seq A exon
TTTGTCCTCTCATAATTAAAAGATGCTCCAGACAATATATCTATTCTCAAA
Seq C2 exon
GTATCCTGATTGGAATCCTGAGATCCTCCCATCGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292_MULTIEX1-6/6=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.125 C2=0.641
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGATTCAGCATCAAAATACATC
R:
TTCTCGATGGGAGGATCTCAGG
Band lengths:
100-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development