HsaEX0074104 @ hg38
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71380513-71396191:+
Coord C1 exon
chr2:71380513-71380565
Coord A exon
chr2:71388623-71388723
Coord C2 exon
chr2:71396141-71396191
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTCATCCGTCGCTCGGCCAGAGT
3' ss Score
4.33
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAGAGATGCAGATGCTTCAAAAGCTGTTGAAATTGTTACTTCAACTTCTGCTG
Seq A exon
AGTCGGTGGATCAGACTCAGCAGCTGGTGCCCCTCGTGAGGAACACTGCAAGGGATCACGACGGAACCCCCGAAAATGAAGGCGAAGAGACTGTGCAGTCA
Seq C2 exon
CCAAAACTGGACAAGCCAAGGCATCTGTAGCCAAAGTAAACAAATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292_MULTIEX3-3/5=C1-C2
Average complexity
ME(1-3[99=100];2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.053 A=0.853 C2=0.540
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGATGCAGATGCTTCAAAAG
R:
ATTTGTTTACTTTGGCTACAGATGCC
Band lengths:
98-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development