HsaEX0074105 @ hg19
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:17894]
Coordinates
chr2:71607643-71623321:+
Coord C1 exon
chr2:71607643-71607695
Coord A exon
chr2:71620524-71620775
Coord C2 exon
chr2:71623271-71623321
Length
252 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCACACCCCCCTCAGGCC
3' ss Score
8.36
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
AAGAGATGCAGATGCTTCAAAAGCTGTTGAAATTGTTACTTCAACTTCTGCTG
Seq A exon
GCCCTCTTTGGATTCCAGTACGATGCATCAGACCATACCATGGCGTGGCTAGGACCCAACACAGTACCAGAAGTGAAGGAAATGATCCTGCAGGACCCGCAGCTCCAGACAACACAGCTTCCTCAGACGACACAAGCCCCGGACATTACCTGGGGGATGCTGAAGAAGACAACTTACAAGGCTGAGCAAATCCTGCTCCAGACACAGAAACCATTCACTCCAGATAATTTGTTCCTTGCTCTGCTCTCTGGT
Seq C2 exon
CCAAAACTGGACAAGCCAAGGCATCTGTAGCCAAAGTAAACAAATCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292_MULTIEX3-3/3=C1-C2
Average complexity
ME(1-3[99=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.069 A=0.440 C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)