HsaEX0074112 @ hg19
Exon Skipping
Gene
ENSG00000187815 | ZNF642
Description
zinc finger protein 642 [Source:HGNC Symbol;Acc:24708]
Coordinates
chr1:40947435-40954886:+
Coord C1 exon
chr1:40947435-40947526
Coord A exon
chr1:40954552-40954660
Coord C2 exon
chr1:40954760-40954886
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATATATTACATTATTTATAGTAA
3' ss Score
2.84
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTCTGCTGTCTCAGGATGCTGAGGACGTAAAGACCCAGAGAGAAAGTTTAGAGGATGAAGTGACCCCTGGACTCCCGACAGCAGAATCCCAG
Seq A exon
TAATCTCCAGATTAGAGATCCAGACAGACTACAGTTCCAGACAGTTTTGTTGATCAGATTTGGAGATCAGAGGATCTCCAAACAGATCCAGAGAAGGCTCCTGATAAAA
Seq C2 exon
GAATTGTTGACTTTCAAGGACATATCTATTGACTTCACCCAGGAAGAGTGGGGGCAGCTGGCTCCTGCTCACCAGAATCTATACCGAGAGGTGATGCTGGAGAACTACAGCAACTTGGTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187815-'2-6,'2-5,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(10.4=16.1)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTGTCTCAGGATGCTGA
R:
CCACTGACACCAAGTTGCTGT
Band lengths:
218-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)