HsaEX0074112 @ hg38
Exon Skipping
Gene
ENSG00000187815 | ZFP69
Description
ZFP69 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:24708]
Coordinates
chr1:40481763-40489214:+
Coord C1 exon
chr1:40481763-40481854
Coord A exon
chr1:40488880-40488988
Coord C2 exon
chr1:40489088-40489214
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATATATTACATTATTTATAGTAA
3' ss Score
2.84
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTCTGCTGTCTCAGGATGCTGAGGACGTAAAGACCCAGAGAGAAAGTTTAGAGGATGAAGTGACCCCTGGACTCCCGACAGCAGAATCCCAG
Seq A exon
TAATCTCCAGATTAGAGATCCAGACAGACTACAGTTCCAGACAGTTTTGTTGATCAGATTTGGAGATCAGAGGATCTCCAAACAGATCCAGAGAAGGCTCCTGATAAAA
Seq C2 exon
GAATTGTTGACTTTCAAGGACATATCTATTGACTTCACCCAGGAAGAGTGGGGGCAGCTGGCTCCTGCTCACCAGAATCTATACCGAGAGGTGATGCTGGAGAACTACAGCAACTTGGTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187815_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(10.4=16.1)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTGTCTCAGGATGCTGA
R:
CCACTGACACCAAGTTGCTGT
Band lengths:
218-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development