HsaEX0074117 @ hg38
Exon Skipping
Gene
ENSG00000187801 | ZFP69B
Description
ZFP69 zinc finger protein B [Source:HGNC Symbol;Acc:HGNC:28053]
Coordinates
chr1:40450656-40457071:+
Coord C1 exon
chr1:40450656-40451088
Coord A exon
chr1:40454203-40454288
Coord C2 exon
chr1:40456945-40457071
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTTTCCTTCCCCAGCTC
3' ss Score
9.12
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CATCTGCAGGGGCTGCTGAGAGTAAATACTTGGCGCCTCCAGCTGCTGGCCAAGGAGACAGATGGAGCTCAAGTTGGGAGATACGCCCTGAGAGCCGATGATAGACACAAGTCCAGATCTCGGATTTTGATACTGTATGTTCCCTGGGTTCCTGAGAGAGGACATTGAGGAGTAGGAGTCGGCGATTAAGGAGATCGGTACAATTGGGAAGCCTCCTGTCAGAGCTTCCAGCAATTTCCTCATCAGAGGTGGACAAGCCCTATGGGCTAAGACAGAGGGTCCTCAGAAAGGAGTGCGGACGCCGTCATGCTGCAGCAGCTCCTGATCACCCTGCCCACCGAGGCCAGCACCTGGGTGAAGTTGCGTCATCCAAAGGCGGCCACGGAGCGGGTGGCCCTGTGGGAGGATGTGACTAAGATGTTTAAAGCAGAAG
Seq A exon
CTCTGCTGTCTCAGGATGCTGATGAGACCCAGGGCGAAAGTTTAGAGAGTAGAGTGACCCTTGGATCCCTGACAGCAGAATCCCAG
Seq C2 exon
GAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187801_MULTIEX1-2/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.306 C2=0.147
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(91.3=97.7)
A:
PF0202312=SCAN=PD(6.5=10.3)
C2:
PF0135222=KRAB=WD(100=95.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGAAGTTGCGTCATCCAA
R:
TCACCTCCCGGTACAGATTCC
Band lengths:
175-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development