MmuEX6095740 @ mm9
Exon Skipping
Gene
ENSMUSG00000064141 | Zfp69
Description
zinc finger protein 69 [Source:MGI Symbol;Acc:MGI:107794]
Coordinates
chr4:120607672-120622165:-
Coord C1 exon
chr4:120621937-120622165
Coord A exon
chr4:120619894-120620174
Coord C2 exon
chr4:120607672-120607798
Length
281 bp
Sequences
Splice sites
3' ss Seq
CAGCTCTTCTCCTTCTACAGCTC
3' ss Score
8.34
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGGCTCAACAACTCTTCCAGGGTAAAAGATTATGGCCTGAGGACGATACAACCAGGAAGCCTCTCATCGAAAGTTCCAGCAGTTTCCCCACCCGAAGCTGCCACCCCCAGTCAGGCCGGCGCCATCATGCCTCAGCAGCTCCTGATCACCCCGGCCACTGAGGCGACCTGGGTGAAGTTGAAGGAGGTGTCCCTGTGGGAGGATGTGACAAAAATGTTTGGAGGAGAAG
Seq A exon
CTCTGCTATCCCATGATGCTAATGGGACACAACAAGAAAGCTTAGCTGATGGAACGACCCCTGGCACCCCTGCAGCAGGATCCCATGATGGAGCGACCCCTGGCACCACTGCAACAGGATCCCATGATGAAGCGACCCCTGGCACCCCTGCAGCAGGATCCCATGATGGAGAGACCCCTGGCATCCCTGCAGCAGGATCCCATGATGGAGAGACCCCTGGCACCCCTACAGCAGGATCCCATGATGGAGTGACCCCTGGCACCACTGCAGCAGGATCCCAG
Seq C2 exon
GAATCGTTGACTTTCAAGGACATTGCCGTGGACTTATCCCAGGAGGAGTGGGGACAGCTGGCTCCTGCATACCAGGATTTGTATCGGGAGGTGATGCTGGAGAACTACAGAAACCTGGTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064141-'1-5,'1-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=1.000 C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAACAACTCTTCCAGGG
R:
AATCCTGGTATGCAGGAGCCA
Band lengths:
307-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: