BtaEX6018556 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039287 | ZFP69
Description
Bos taurus zinc finger protein 642 (ZFP69), mRNA. [Source:RefSeq mRNA;Acc:NM_001102063]
Coordinates
chr3:106265532-106275253:-
Coord C1 exon
chr3:106274867-106275253
Coord A exon
chr3:106272878-106272963
Coord C2 exon
chr3:106265532-106265658
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTTTTCCTTCCTCAGCTC
3' ss Score
9.7
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAAGAGGCGTATACTCAGACCTACTCAACCAGCCACCTGCAAGCAGGCAGGACTTAATTTTAGAGAGGAATCAGTTTTTCAGAGCTGTGAGAGCCACATCAGCCTCTAGGAGCCCCTAGGTTCTGGTGCCACAGGCACACGCAAGAATCCTGAGGGCAGGAGACAGATCACAGGAGGACCACGCAACTGTGAGGCATCTAAGCAGAGGCTCTGGCCATTTGCTCACCAGAAGTGGACAAGGTCAGTCAGGAGGCATCGTCATGCTGCAGCAGCTCCTGATCACCCTGCCCACCGAGGCCAGCACATGGGTGAAGTTGCACCATCCAGAGAACGCCAAGGAGGGGGCGCCCCTGTGGGAGGATGTGACCAAGATGTTTGAAGGAGGAG
Seq A exon
CTCTGCTATCTCAGGATGCTGATGAGACCCAGGGAGAAAGTTTAAAGGATGAATTGACCCCCGGGACCCCAACAACAGACTCCCAG
Seq C2 exon
GAACTGTTGACCTTCAAGGACATATCTGTGGACTTCACCCAGGAGGAGTGGGGGCAGCTGGCGCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAATCTGGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039287-'1-8,'1-0,2-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=1.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(95.5=97.7)
A:
PF0202312=SCAN=PD(2.3=3.4)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCACCATCCAGAGAACG
R:
TCACCTCCCGGTACAGATTCC
Band lengths:
169-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]