HsaEX6030288 @ hg38
Exon Skipping
Gene
ENSG00000187815 | ZFP69
Description
ZFP69 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:24708]
Coordinates
chr1:40479036-40489214:+
Coord C1 exon
chr1:40479036-40479488
Coord A exon
chr1:40481763-40481854
Coord C2 exon
chr1:40489088-40489214
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTTTCCTTCCCCAGCTC
3' ss Score
9.12
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTCTGGAGTTCTGGAGACAAGTGCTTCTGGATCCCTCTTCCCTTCCCTTTTGCTCCTCTAAAGAGTATGGAGACATGAACTCAAACCTAACTAACTGGCTGCCTCCCAAAGAAAGTGCTTGATTTAAAGGGGAGTTTGTTTTCCAGAATTGTTAAAGTCACATCAGTCTCTAGGAACCCCCAGGTCCTGGTGCTGCAGGGACACACCAGAGTCCTGAGGGCAGGTGATTGGAATCTGAGCAACACCCCACAACTGTGAAGCGTCTCATCAAGAGCTTCTGGCAATTTCCTCACCAGAAGTGGACAAGTCCAGTAAGGCAGGCATCATGCCACAGCAGCTCCTGATCACCCTGCCTACCGAGGCCAGCACCTGGGTGAAGCTGCAACATCCAAAGAAGGCCGTGGAGGGGGCGCCCCTGTGGGAGGATGTGACTAAAATGTTTGAAGGAGAAG
Seq A exon
CTCTGCTGTCTCAGGATGCTGAGGACGTAAAGACCCAGAGAGAAAGTTTAGAGGATGAAGTGACCCCTGGACTCCCGACAGCAGAATCCCAG
Seq C2 exon
GAATTGTTGACTTTCAAGGACATATCTATTGACTTCACCCAGGAAGAGTGGGGGCAGCTGGCTCCTGCTCACCAGAATCTATACCGAGAGGTGATGCTGGAGAACTACAGCAACTTGGTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187815-'1-8,'1-6,2-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.914 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0202312=SCAN=PD(10.4=16.1)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCCAAAGAAGGCCGTGG
R:
CTCCAGCATCACCTCTCGGTA
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains