HsaEX6030288 @ hg19
Exon Skipping
Gene
ENSG00000187815 | ZNF642
Description
zinc finger protein 642 [Source:HGNC Symbol;Acc:24708]
Coordinates
chr1:40944708-40954886:+
Coord C1 exon
chr1:40944708-40945160
Coord A exon
chr1:40947435-40947526
Coord C2 exon
chr1:40954760-40954886
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTTTCCTTCCCCAGCTC
3' ss Score
9.12
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTCTGGAGTTCTGGAGACAAGTGCTTCTGGATCCCTCTTCCCTTCCCTTTTGCTCCTCTAAAGAGTATGGAGACATGAACTCAAACCTAACTAACTGGCTGCCTCCCAAAGAAAGTGCTTGATTTAAAGGGGAGTTTGTTTTCCAGAATTGTTAAAGTCACATCAGTCTCTAGGAACCCCCAGGTCCTGGTGCTGCAGGGACACACCAGAGTCCTGAGGGCAGGTGATTGGAATCTGAGCAACACCCCACAACTGTGAAGCGTCTCATCAAGAGCTTCTGGCAATTTCCTCACCAGAAGTGGACAAGTCCAGTAAGGCAGGCATCATGCCACAGCAGCTCCTGATCACCCTGCCTACCGAGGCCAGCACCTGGGTGAAGCTGCAACATCCAAAGAAGGCCGTGGAGGGGGCGCCCCTGTGGGAGGATGTGACTAAAATGTTTGAAGGAGAAG
Seq A exon
CTCTGCTGTCTCAGGATGCTGAGGACGTAAAGACCCAGAGAGAAAGTTTAGAGGATGAAGTGACCCCTGGACTCCCGACAGCAGAATCCCAG
Seq C2 exon
GAATTGTTGACTTTCAAGGACATATCTATTGACTTCACCCAGGAAGAGTGGGGGCAGCTGGCTCCTGCTCACCAGAATCTATACCGAGAGGTGATGCTGGAGAACTACAGCAACTTGGTGTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187815-'1-6,'1-4,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.914 C2=0.000
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(91.3=97.7)
A:
PF0202312=SCAN=PD(10.4=16.1)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCCAAAGAAGGCCGTGG
R:
CTCCAGCATCACCTCTCGGTA
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)