BtaEX0040948 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039287 | ZFP69
Description
Bos taurus zinc finger protein 642 (ZFP69), mRNA. [Source:RefSeq mRNA;Acc:NM_001102063]
Coordinates
chr3:106259858-106272963:-
Coord C1 exon
chr3:106272878-106272963
Coord A exon
chr3:106265532-106265658
Coord C2 exon
chr3:106259858-106261209
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAATATATTGGATATTCTAGGAA
3' ss Score
4.86
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTCTGCTATCTCAGGATGCTGATGAGACCCAGGGAGAAAGTTTAAAGGATGAATTGACCCCCGGGACCCCAACAACAGACTCCCAG
Seq A exon
GAACTGTTGACCTTCAAGGACATATCTGTGGACTTCACCCAGGAGGAGTGGGGGCAGCTGGCGCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAATCTGGTCTCAGTGG
Seq C2 exon
ACTTGAAGAGTAAAACAGAAACCAGTGCATCAAATGCAAAATACAACATTTTACAAGAACAGTTATATCATGGCATGATGATGGAAAGGTTCATGAGGGATGATGTCATTTATTCCACATTGAAGAAAGTCTCAGAATATGATGATGAGTTAGAAAAGCACCAGGATCGCCATGGAAGAAATGTGAGACAAACCATTATGACCCATAAGAAGAGAAGCCAAGAAACTTACAAATTTGGCAAAAATATTGTGAGTTCAAATGTTGTTATAGAACAGAGGCTCCGTAAATGTGACACACCTAGAAAGAGAAACAAATGCAAATCAGATGTGATTAATCATCCAACAAGTTACATAAGAGTAAAAACCTATGAATGTAATATATGTGAAAAGGCCTTCAAACAACCCATTCACCTTACTGAACACATGAGAATTCATACTGGTGAGAAACCTTTCAGATGTAAGGAATGTGGTAGGGCCTTCAGTCAAAGTGCATCCCTTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039287_MULTIEX1-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.047 C2=0.201
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(2.3=3.4)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGAGACCCAGGGAGAA
R:
ATGGCGATCCTGGTGCTTTTC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development