MmuEX6095741 @ mm9
Exon Skipping
Gene
ENSMUSG00000064141 | Zfp69
Description
zinc finger protein 69 [Source:MGI Symbol;Acc:MGI:107794]
Coordinates
chr4:120606938-120620174:-
Coord C1 exon
chr4:120619894-120620174
Coord A exon
chr4:120607672-120607798
Coord C2 exon
chr4:120606938-120607036
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTAACTGTTGGATATTGCAGGAA
3' ss Score
6.02
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTCTGCTATCCCATGATGCTAATGGGACACAACAAGAAAGCTTAGCTGATGGAACGACCCCTGGCACCCCTGCAGCAGGATCCCATGATGGAGCGACCCCTGGCACCACTGCAACAGGATCCCATGATGAAGCGACCCCTGGCACCCCTGCAGCAGGATCCCATGATGGAGAGACCCCTGGCATCCCTGCAGCAGGATCCCATGATGGAGAGACCCCTGGCACCCCTACAGCAGGATCCCATGATGGAGTGACCCCTGGCACCACTGCAGCAGGATCCCAG
Seq A exon
GAATCGTTGACTTTCAAGGACATTGCCGTGGACTTATCCCAGGAGGAGTGGGGACAGCTGGCTCCTGCATACCAGGATTTGTATCGGGAGGTGATGCTGGAGAACTACAGAAACCTGGTGTCAGTGG
Seq C2 exon
CAGGATATCAACTTTCCAAGCCTACTGTGATTTCCCAGTTGGAAAAAGGAGAGGGACCATGCATGGCAGAGAGTCAAGGCCCAGAGGATCCCATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064141-'4-9,'4-5,5-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.462 C2=0.711
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=100.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCATGATGAAGCGACCC
R:
ATCCTCTGGGCCTTGACTCTC
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: