BtaALTA0033736-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000039287 | ZFP69
Description
Bos taurus zinc finger protein 642 (ZFP69), mRNA. [Source:RefSeq mRNA;Acc:NM_001102063]
Coordinates
chr3:106265086-106265658:-
Coord C1 exon
chr3:106265532-106265658
Coord A exon
chr3:106265182-106265184
Coord C2 exon
chr3:106265086-106265181
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CCTTTTTTTCACTCCATAAGCAG
3' ss Score
1.7
Exon sequences
Seq C1 exon
GAACTGTTGACCTTCAAGGACATATCTGTGGACTTCACCCAGGAGGAGTGGGGGCAGCTGGCGCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAATCTGGTCTCAGTGG
Seq A exon
CAG
Seq C2 exon
GTTGTCAGCTTTCCAAACCTAGTGTGATTTCCCAGTTGGAGAAAGGAGAAGAGCCATGGATGACAGAGAAAGAAGGCCCAGGAGATCCCAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039287-5-10,5-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.706
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGTGATGCTGGAGAACT
R:
TGTCATCCATGGCTCTTCTCCT
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development