RnoALTA0000700-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000028662 | AABR07049821.2
Description
NA
Coordinates
chr5:139862930-139864393:-
Coord C1 exon
chr5:139863664-139864393
Coord A exon
chr5:139863026-139863028
Coord C2 exon
chr5:139862930-139863025
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTTTCTTTAACTCCATAAGCAG
3' ss Score
-0.12
Exon sequences
Seq C1 exon
TTACCACAGAGCCGCCTCCCTCCGTGCCGCTCTTCCTCCTCAGACAGATGTTCACCCAGGCCTTTGGAACATTCTGGAATACCCTTCCCCGAGATTTCCACATGGCTCTCCCCCATCGAATCACTGCCTCTAGCCAAACTATGTTTCGGAGAACCCTGCTTTCTTCAGCACCCCAAAACAAGATCACCTCAGCTCTCACTGGTGGTTTCACTTCTTCATGTTTCTTTTCTGTCCTGTATATGTAATTACTTATAGCAGCCTCTAGAAAATCCTGGTGAAATTGGTGTGGAATCTCTGAACTTGGAATACTGCCAAGGCTCCTTAGACTTTGACCGGGGTGGACTCTGACTCCTCTGACTGTTTGATATTGTAGGAATTGTTGACTTTCAAGGACATAGCTGTGGACTTATCCCAGGAGGAATGGGGGCAACTGGCTCCTGCATACCGGGATTTGTATCGGGAGGTGATGCTGGAGAACTACAGAAACCTGGTATCAGTGG
Seq A exon
CAG
Seq C2 exon
GATATCAACTTTCCAAGCCTACTGTGATTTCCCAGTTGGAGAAAGGAGAGGGACCATGGACGGCAGAGAGTCAAGGCCCAAAGGATTCCATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028662-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGGGAGGTGATGCTGGAG
R:
CGTCCATGGTCCCTCTCCTTT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]