HsaEX0074135 @ hg19
Exon Skipping
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:30899]
Coordinates
chr7:99197828-99204517:+
Coord C1 exon
chr7:99197828-99197908
Coord A exon
chr7:99202009-99202219
Coord C2 exon
chr7:99204371-99204517
Length
211 bp
Sequences
Splice sites
3' ss Seq
ATCACTTTTCTCTTACACAGGTG
3' ss Score
10.6
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
Exon sequences
Seq C1 exon
CAGTTCCAAGAGCCTCTGAGTTCCTGCCTTTTTTCATCTCTGAATCCCCACCATTGGCCTACATTGGGAGTGGGGCGACCT
Seq A exon
GTGATGCTGACGTTAGAGGACAAGGACATGAAGGGATTCTCCTGGGCCATAGTCCCAGCCTTAACCTCCCTAGGCTACCTGATTATACTGGTGGTCTCCATCTTTCCCTTCTGGGTGCGACTGACAAACGAGGAGTCCCACGAAGTCTTTTTCAGTGGCCTATTTGAGAACTGCTTCAATGCCAAATGCTGGAAGCCTCGACCCTTATCCA
Seq C2 exon
TTTACATCATCCTCGGCCGGGTTTTCCTGCTCTCTGCAGTTTTCTTGGCTTTCGTCACCACCTTCATCATGATGCCCTTTGCATCCGAGTTCTTCCCGAGGACCTGGAAGCAAAACTTTGTGTTAGCCTGCATCAGCTTCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-'33-26,'33-25,35-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCAAGAGCCTCTGAGT
R:
CTGTGAAGAAGCTGATGCAGG
Band lengths:
228-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)