HsaEX0074136 @ hg19
Exon Skipping
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:30899]
Coordinates
chr7:99202009-99205433:+
Coord C1 exon
chr7:99202009-99202219
Coord A exon
chr7:99204371-99204517
Coord C2 exon
chr7:99205296-99205433
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACTTCTCCCTCCCCTGCAGTTT
3' ss Score
9.57
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GTGATGCTGACGTTAGAGGACAAGGACATGAAGGGATTCTCCTGGGCCATAGTCCCAGCCTTAACCTCCCTAGGCTACCTGATTATACTGGTGGTCTCCATCTTTCCCTTCTGGGTGCGACTGACAAACGAGGAGTCCCACGAAGTCTTTTTCAGTGGCCTATTTGAGAACTGCTTCAATGCCAAATGCTGGAAGCCTCGACCCTTATCCA
Seq A exon
TTTACATCATCCTCGGCCGGGTTTTCCTGCTCTCTGCAGTTTTCTTGGCTTTCGTCACCACCTTCATCATGATGCCCTTTGCATCCGAGTTCTTCCCGAGGACCTGGAAGCAAAACTTTGTGTTAGCCTGCATCAGCTTCTTCACAG
Seq C2 exon
GGGCCTGTGCCTTCCTGGCTTTGGTGCTGCATGCCCTGGAGATCAAGGCTCTGAGGATGAAGCTCGGCCCCCTGCAGTTCTCCGTGCTGTGGCCTTACTACGTGCTGGGCTTCGGCATCTTTCTGTTCATAGTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-'35-27,'35-26,36-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCCTGGGCCATAGTCCC
R:
CGAGCTTCATCCTCAGAGCCT
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)