HsaEX0074140 @ hg19
Exon Skipping
Gene
ENSG00000144792 | ZNF660
Description
zinc finger protein 660 [Source:HGNC Symbol;Acc:26720]
Coordinates
chr3:44627597-44635665:+
Coord C1 exon
chr3:44627597-44627705
Coord A exon
chr3:44628622-44628742
Coord C2 exon
chr3:44635506-44635665
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCCCTTGAATTTATTTTCAGGTA
3' ss Score
9.81
5' ss Seq
CAAGTAAAG
5' ss Score
2.69
Exon sequences
Seq C1 exon
TGACTCAAGACCCTCTTAGGAACTTCTTCACTGAACTCAAGGAGGAGATCAGGCAAGATCTGTGCTGTGCAGATCCTTTGGATTGAGGCTGCTGTGCACAGGAATATGG
Seq A exon
GTATTTCCTCTTATTCCTTACTCCACTGCACCTAATCAATAACCAAGAACCATGTAACCATTGCTTAGAGGGACTTGAACAGGCAGATGATGCTGGTGAATTAAAGGAAGACAGCCTCCAA
Seq C2 exon
ATGGTGAAACTGGGACTGAGGAGGAGTTAATTCCAAAGCATCATTCCTGAAAAATCAGAATCATACATACTTTCAAGAGAATTCCACAGAGACATTGCCCAGGAAGTCAAAATTTAGAAGGCTCCTCTGAAGGGAAAGAGAAGACTAGAGAGGACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144792-'2-4,'2-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF0013017=C1_1=WD(100=15.7),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF0013017=C1_1=WD(100=15.4),PF087906=zf-LYAR=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF0013017=C1_1=WD(100=15.1),PF0142914=MBD=WD(100=31.9),PF134651=zf-H2C2_2=WD(100=6.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCAAGACCCTCTTAGGAACT
R:
TTCCCTTCAGAGGAGCCTTCT
Band lengths:
245-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)