HsaINT0188029 @ hg19
Intron Retention
Gene
ENSG00000144792 | ZNF660
Description
zinc finger protein 660 [Source:HGNC Symbol;Acc:26720]
Coordinates
chr3:44627597-44637557:+
Coord C1 exon
chr3:44627597-44627705
Coord A exon
chr3:44627706-44635505
Coord C2 exon
chr3:44635506-44637557
Length
7800 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ATTTCTGTTTCTCCTGTCAGATG
3' ss Score
11.03
Exon sequences
Seq C1 exon
TGACTCAAGACCCTCTTAGGAACTTCTTCACTGAACTCAAGGAGGAGATCAGGCAAGATCTGTGCTGTGCAGATCCTTTGGATTGAGGCTGCTGTGCACAGGAATATGG
Seq A exon
GTGAGTCATTCCATTCTCTCCTGGGCAGGTGAGGCCTAGATTGTGAAGTTAGTCTGGGCACAGGAATCCTGCTTGTGGGCACCAGGGTTGAAAGGGAGCTTCTCTCAGTGGTATTTATCAAACAGGAGAAAAGCACTGAAGTGGGCAGGGGGCCTCTGGACCTTGAGGAGTAGAGTTTTGTTTCAGATGGGAATAAGGGTGATGTAGTAGAACTCAAAATTGGGTGTCATGGGACTTGGATTTGAGTCCCAGCTTTCCTCTAAGTTCCAAGTTTTCCTTCTGTACATTTGGATATAAGACTGGATAGACTGGGAGGTTCCTTCCAGCTCTGACATACTGAGAGTCTCTGAATAGTGGGACCAGGTCAATCTCTTAGGGAATTTAGTCCCTGGGATGACTCTGTTGAGACAGAATTGCCAAGAATGCAAATACACCATTATGGTGTTTCCCAGATAATATGAAGCACAAAAAGGACAAACATGTAGAGGAGGGATGGTAGTAGTGATGTGTGGATTTGGCTCTCAGCATCCCTATGTGCACTCCAGGTGTTAGAATCTTAAACTTGTTTAATTTACCATTTCAAATCAAACAATGCTGACTGAGCCCTCTCTGTGTCAGACACCATGTGGTATCTACAGGCAAATCTCATGGGAACTGCTCTCTGAGGGCATAGAGCTTAATGTATATATTTGAGGATGGACACAGACATACACACAAGCAATTCCAGTATAAGGCAAACTCTATTTTATAGATTTGTTATGGCATTTTTTGGAATACAGAAATTTTTATGTGTCAGATATATCAGCTTTTTCACATGGTGTTAGCCTTTCCCTTGAGGCTTAGGCCTTTCTTCTAATTCTTTTTTTTTCTTGCAATGTTTACATTTCACTTATCCATCCCTTGAATTTATTTTCAGGTATTTCCTCTTATTCCTTACTCCACTGCACCTAATCAATAACCAAGAACCATGTAACCATTGCTTAGAGGGACTTGAACAGGCAGATGATGCTGGTGAATTAAAGGAAGACAGCCTCCAAGTAAAGCCTCTCTCTCTCTCTCTCAATAGGATTCTACCCTTTATGTATTTTTCACAGCCTGAAATGGATGGTGGTCCTAGGATTAGAACACTTACCTACCAGTCTCAGAGATTTGTGGGTTAGAGATCTGCAGGGCCTTATCAGTCCTCATACATTCACTGGCTGTCTGAGATTTTGCTTTTCTGTACAGTTGCCTAGATACCCCTAGTGTCCTACTGGCCTGTGGCCTCATGTTTCCCTCCAAACTTCTCCAGCCAAGACCCTACTTCCTTAGTACCTAGGAATTCTTCCAGGATTTCTGAGGGCATTTCCTATCCAATCAGACAGAAGGGAGCAAATAGGTTTCTTTTTGATCAAACTCTCCTCATTTGGCCCTCTTTGATCTCCTGTCTGGTCCTGCTTCCTCCTCAGCTCCTCCATCACCACCCTGGGCTTTCTTACAGTGCATCGCTGTGCATTTCTCTTTCTCCCTACCTGCCCCTTTGTGTTAGGCTATTCTTGTGTTGCTGTAAAGAAATACCAGCCGGGCGCGGTGGCTTACGCCTGCAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGAGGAATCACTTGAACCTGGGAGGCAGAGGTTGTAGTGAGCTGAGATCACGCCATTGCACTCTAGCCTAGGCAACAAGAGCGAAACTTCGTCTCAGAAAAAAAGAAAGAAAGAAAGAAAGAAATACCTGTGACTGGGTTAATTGTAAAGAAAAGAGTTTAAATTGACTCACTGTTCTGCAGGCTGTACAGGAAGCACGGTGCCAGCATCTGTTCAGTTTCTGGGGAGGCCTCAGGAAGCTTTTACTCATGGTGGAAAGTGAAGTAGGAGGAGGCAGAGCATGGTGAGAGTAGGAGCAAGAGCAAGGCAGAGGGATACCACACACTTTTAAACAACATGATCTCACGAGAACTCACTATCACAAGGACAGAACCAAGAGGATGACGATAAGCCATTCATGAGAAATCTACCCCCACGATCCAGTCACCTCCCAACAGGCCCACCTCCAACATAGAAGATTACATTTCAATGTGAGATTTGGAAGGAACATCTAAATGATATCACTTTTCTAACCCAAATCCCTTTCTCAGTAAGCTTATCTGTTTTTTTATTTTTTTAATGTATTTATTTATTTTGAGACAAGTTCTCACTGTCTCCCAGGCTGGAGTGTGGCGGCATGATCATAGCTCACTGCAGCCTCGACCTCCCTCAGCCTCCCAAGTAGCTGGGACCACAGGCATATGCCACCACACCTGGCTCACTTTTTAAAATATTTTTACCCAGGCTGATCAAACACCTGGGCTCAGGCAGTCCTCCCACCTCACCCTACCAAAGTGCTGGGATTATAGGAGTGAGCCACCGTGCCCGACCCTCAGTAAGTTTATACATTTTCATGACTCCCTCTGTCCTCTCTGTCTTATCATTCTCAAATTTGCCTTCGTGATATATTCCTCTTCACCTTGTCTAAAATGTTTCTGTGTGTCCCCATCTTGCTTAGTGACACTACCATTCTTGGTATTCAGACATGGATCTGATGACCTTGGATTGTTTCCTTCAGTCCATCCTCTGTATTCAAAGGAATATGGATGTGTGCGTTATACATCTGGATGCGTTCCTGAAAATAGCTAGACTTCATTGTTCTCTGTTCTCTCATCTTGGATTAGGGTCTTGCTATCTTATTCATTTGTTCATTCATTCAACAAACGTTTATTGGGTACCTACAACGTGCCAGACCCTCCAGTGTTCACCTGTACCGCATGACTAGTGTTGTCTCCTAATTCATTTCCCTTCCTCTTTTCTTTTTAACCCCCTCTAATCCATCTGGGCTAATCTTCCTAAAGAGTTCTTATCCTAATTTCACTTTTGGGTAGGATAATGCAAAATTTATTGTCCAAACGGGGATACTGTTGTGAGTTAAGGGAGCCATTATTAAATATGATGCTGGGATAGTAGGCTTAAACTAGCACTATTCTGGGAAAACCAGGATATATGATTGCCCTACTTGACATCTCTTGGATTCTTTACTTTCTGTTTCCCTCAATTTACTCCCCATGTGTTATCCCAGCTGCCTCTCTCCTCTGTTTTCCATTTCATTAAGCTGAGAGAAACGTGAATGTTCTGGGAGGTGGTAGTGGAGGAACTATGGGAACTAGGGGAAGTGCATGGTAATGCTTGAAAAACTGTATTGTTAAGTGAGAAAAAGAAGGAAAATAACAAGAGTGGAGAATAGCAAGGTACAAAAAAGAATATAGAATGGAGAAAGAAAATTAAGGATAGATTTCACTCTTCTGTTTAGAACTGGTTTCCCTTTGACCATCAGTTTATATCCATATTTTTCATCTTGTAATTTCAGTATTCTGGTTGGAATCACTTCAGGCAGCTTGATTCTTTCTTCATTTGTTAATTCCAACAACAAAAAATGTTGAGCGCTTACCATGTGCCTGGGACTGTGGTAGTGCTAGGAATACAGGGTAAGCAGGACGGACAAAATCCCTGCCTACATGAAGTTTATATAATATTATGATCTCCCATTTATTTTCATGTATACCAACCCTGTGCCTTTTTTTTTTTTTTTTTTTTTTTGAGAAAACACTGCTTATTCTCCAGGGCTCAGCCTAAATTCTGCCTTTTTAAAATGCTTTTCTCCATCATTCCATGCCTTAGTAATTGCTCCCTCCCTCCCCTAGTCCTCTTCATCTCCTGCTTGCATACATTGTAAATTTGAATTTGCTCTCTTATTGTTTTTCCATACTACTCCATTGTAAGCTCTTTAAGGGAAGTATGATATTTCATGCTTGTATTAGTGTGCTTGGGTTACCATAACAAAATGCCATAAACTGAGTGGCTTAAACAACAGAAACTTATTTTCTCACAGTTCTGCAGCCTAGAAGTGTGAGATCCATGTGCCTCGCCATTTTGGTTTCTGGTAGGGGGCTCTCATCCTGTCTTGTAGCTGGCCATCTTCTTACTATGTATTCTCATAGCCTTTATGTGTATGTGTGTGGAGAGAGGGAGAGCATGTAAGAGAACTTTCTTGTGTTTCTTTTTATAAGGACATGAATTCTGTTGGATCAGGGCCCACCCTTATGACCTCATTTAACCTTAATTATCTCCTTAGAGGCCCCATCTCCAAATACAGTCACATTGGGGGTTAGAGCTTTAACATACAAATGTTAGGGGGACACAAACATTCAGTCCATGACAATGCTTCTTTAAATTTTCCCTGTGTTAGACCCAGAACAGGGATATATACAGAGTAGGGTGCTCATTAGTTATGAGTTTAAGAAATGTATGAAGAAAAGAGAAGTTCCAGAGAAGATGAGAAATTGAAAAGAAATTCAGAAAAAACTATCAACTTTCTCACAGAACTTTGAAGGTGAGTTCACTTGCTCTACTGCTCTGCATTGCAGTCCCCTGGCTTTGCACTGTTTTCTCCACCTGCTTCATCCTTAATGATTAGGAGAGGTAGCAGCAGCTGGATGTGAGTGAGCCCAGGACCCTGGCAAGAATCCACCCTCCCTCACCATTCTCTCTTCCTACCCTTCTTATCTTGGGCATGAGTTTGTGTGTATGTGCCTGTGTATGGAATCAGTGGCCACCCGCATTTCTGAGATGTGAACTCGAATATGTGCAGTTATCTTTTTGCCAGTCTCGAGTGCCACCATTTGCTATCTTCCTTCTCCAGAAAGTGTGGCTCCATTTATCAGAAAGCTGTGGGACATGGAAATTGGTCAAACTTTTTTTTTTGAGACAAAGTCTTGCTCTGTTGCCCAGGCTGAAGTGCAGTGGCATAATCAGGGCTCACTGCAGCCTGGACCTCCTGGGCTCAAGCAATCCTCTCACCTCAGCCTCCTGAGTAATTGGGACTACAGGTGCACACCACCATGCCTAGCTAATTTTTAAATTCTTTGTAGAGATGTAGTCTCCCTGTCTTACCCTGGCTGGTCTCAAACTTTTGGGCCCAAGTGATCCTCCCGCCTCAGCCTTGCAAAGTGCTGAGATTATAGACATGTGCCACCATGCTCAGCCCATCAAACTTTTTTGAATAGCAACAAGCAATACTGCACAACAGTTGCACTCCTTCTGACCCAATTAACTCATTTGTGGAACTTTTGTCCTAGGAATATATTTTAATAGGAAGAAAATTTTGTGTGTATAAAGAGATTATGATAGCATTATTGATAGTAGTTAACTTCAAGGAACAACAGAAATGTCCAACACTAGCAAAATGGTAGGTAAATTAGAAGGAATTCAATGATCATATGAAGATTAAATAGCAATGTGGAAAAATGTGCATTAAAAAATTAAGTGGAGGCTGGGCGCAGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGGCCAGCCTGGCCAACATGGCGAAATACCATTTCTACTTAAAAAATACAAAAACTAGCCAGGCGTGGTGGCAGACGCCTGTAATCCCAGCTACTCAGGAGGGTGAGGCAGGGAGAATTGCTTGAATCCAGGAGGCGGAGGTTGTAGTGAGTGGAGATTGAACCACTGCACTCTAGCCTGGGCAACAGAGCGAGCCTCCGTCTCAAAAAACAAAAAAAAATTTGTGAGGCAGGGATTAGGGAGATGTTGGTCAAAGGATACAAAAATTCTGTTAGGAGGAATAATTTCAGGAAATCTATTGTATTACATGGTAATTATAGTTAATATCAACATATTTAGACTTGAAAAGTGCTAAGAGAGATTTTAAATGTTCTTACCATGAAAAAATAATAAGTATGTGAAGTAATGGATATGTTAATTAGCTTGATTTACCTGTTCCATGTGTAAACATTTATAAAAACATGTTGTATGCCATAAATATATATACTTTTTTATCAACTAAAAAATAAATGAAATGAACTGCAAGAAGTAGGATGCAAAATAATATCTACCATATTTAATTGTCTAACAAAATACATATGGGCAAGTCTATAAAGGAGCATAGTCATGTGTTAGTATCATGTAGTTATCTTTTTGCTTTCTTTTACATCCCAACTCCCTCTAAGGTCTGCCATGGTTACCTGTATGTCCAGAGTTTCACGTCAAACCAGTTGGGAAATTCCTCCTTATTCTGATGTTTGGTTTCATGTATTGGCACCTCTTGGTTATGCTGCCCCTACTCTGACGCTTTTGCCATCCTTAGATACTTTACTATTATGCCATGCAAGATCCTATCAGAGTTTCATCTGCCATGCTTTAACTAACCTTCTTTCCCAATTTAGCCTCTCAGACTCACCCCTTAAGTAGTCTCAGTCTGTCAGAGTGACAGCATGGTGAAAAGCAGACAGACTACACTTGCATATAAAACTGGATCCAACTGGCTGGGCGCGGTGGCTAACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGTAGCCCCAGCCACTCGGGAGGCTGAAGCAGGAGAACGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCGTCTCAGAAAAAAAAAAAAAACTGGGTCCAACTATAGGCCAGCCCCTATGAAGTAGGCTATGATGTGACTAGGCTCAATATTGAAAGAACTGTGTCACCACTTAACAAGATAGGGTTTACCTGCAAGGATGTAGACTGGGGTCTAGTACCTGGACCTTGAGCAAAAGATGAAATCCTACTCACAACCTAAGACAGAATCCTAGTTGCTATTCTATAATACCATTTTGAGCACCTTTTACATACTGGCCACAGTATCACTAGTACTAGGGGAATAGGTTAGCAAGAACTAAAAGCCAAACTGAACTAAAGTTTAGTCATCTTTCAGTTCACTTTTTCTAGGACCAGATTATAGTTGAGCCTGCCATTAGGAGTTAGATGGCTCTGAGCTGGGTGCGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTGAAACCCCATCTCTGCTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCAGGCGCCTGTAATCCCAGTTACTAGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAAGCGGAGGTTGCAGTGAGTCAAGATCGTGCCATTGCACTCCATCTCAAAAAAAAAAAAAAAAAAAGCAACGAGTTAGATGGCTCCAATTCAGGGAGTAGAGGATGAGGCAGGAAGGAACTAGGGTAGATTTTATACGATTCATTGCTTATTCTGATGCTGGACCTGCTGGGCTCCCCTTAGCCCCTGGCTTTCCATAAGCCTTTACATTGGCCTCTATGTTTAACTTCATTTTTGTCATCTTTTTGATCTGTTCCCCTGCCCTTGAACACTTAACCCTTCCATATGGCTACCACATCTTGTCCGTGGATAGATCTCCTTCCTCTGGTACAGAGAATAGGTGACATGTGCAATTTCTGTTTCTCCTGTCAG
Seq C2 exon
ATGGTGAAACTGGGACTGAGGAGGAGTTAATTCCAAAGCATCATTCCTGAAAAATCAGAATCATACATACTTTCAAGAGAATTCCACAGAGACATTGCCCAGGAAGTCAAAATTTAGAAGGCTCCTCTGAAGGGAAAGAGAAGACTAGAGAGGACACTGGTATGTTCCAAGCAGGAGAAAATGAGGAGAAAGACAAGAAATTTCAAACATAAGACAGTTAAAGACAATAAAGTACTCACAGAAGGGAGTGACCAAGAATCTGAAAAAGACAATAGTCAGTGCTGTGACCCTGCAACAAATGAGAGAGTTCAGGCTGAAAAGAGACAGTATGTATGTACTGAGTGTGGGAAAGCCTTTAGTCAGAGTGCAAACCTCACAGTACATGAGCGAATCCACACGGGAGAGAAACCCTATAAGTGTAAGGAGTGTGGAAAAGCTTTCAGTCATAGCTCTAACCTTGTTGTTCATCGGAGAATCCACACTGGACTGAAGCCCTATACATGCAGTGAATGTGGGAAATCTTTCAGTGGAAAGTCACATCTTATTCGGCACCAGGGAATCCACAGTGGGGAGAAAACTTATGAATGTAAAGAGTGTGGGAAAGCCTTTAGTCGGAGTTCGGGCCTTATATCACATCACAGAGTTCACACCGGAGAGAAGCCCTATTCTTGTATTGAGTGTGGGAAAGCCTTTAGCCGTAGTTCAAACCTTACTCAACATCAGCGAATGCACAGAGGAAAAAAAGTTTACAAATGTAAGGAGTGTGGGAAAACATGTGGTTCTAATACAAAGATTATGGACCATCAGAGAATTCACACTGGAGAGAAGCCTTATGAATGTGATGAGTGTGGAAAAACTTTCATCTTAAGGAAAACTCTTAATGAACACCAGAGACTTCATCGTAGAGAGAAACCTTACAAATGTAATGAGTGTGGGAAGGCTTTTACTTCTAATCGAAACCTTGTTGATCATCAGAGAGTTCACACTGGAGAGAAACCCTATAAATGTAATGAATGTGGGAAAACCTTCAGGCAGACTTCTCAAGTTATTCTACACTTGAGAACCCACACTAAGGAGAAACCCTATAAATGTAGTGAGTGTGGGAAAGCCTATCGGTATAGTTCACAGCTTATTCAACACCAGAGGAAACATAATGAGGAGAAAGAAACCTCATAAATAACAAATATTGTGGGTAGTAGGGCTGACTGCTGCTTTTCTAAAAAGTAGTTCTTTAGTATCAACTTTAATTCTACTTCTAAGAATCATACTCTACTTCTAAGAAAATAATTAGAAGTAGACAAAGATTAATGAAAGGGATGTTCATGACAGCATCATATACGACTGAAAGAAGAAAACTAGATTTTCAACATTACAGGGTTGAAATGAATGATGAGCTATCCATATGATGGTTCTGCAGCCATTGCAAACATTTTTAAAGACAATTTAATGCCATGGGGAAATGATTGGATAAGACGGAAGATAATGACATACAATCCAAAATTTAAAAAAATATTTTTGCATAGGAAAAATTGAGAAGGAAGTAAACCAAAATGTTAACAGTGATCATCTCTGGGCGATAGGATTATAGGTGATTTCTATTTTCTTCTGTATACTTTTCTATGCTTTCTAGATTATCTACATGAGAATATACTAATTTTATATGCAAGAAAAAAAGCACAGTATTTTTTAAATGCAATGAAGACGTGCTTATTTTCACTCAGCAGTGTTATGAAAGGCACGTAGTATATAGAGCCCAAAGCCCTGGGATTGCACCCTGACACTGGCATTTAGCAGCAGTGGAACCGCGAGCAAGTCCCTTCCTTTTAGAGCGTGTTTCCTGTTAAGTAAAATCATAAACACCGATCCTTTGTCCTTTTTAGTTTTAAGACAAGCTGACTTTAGAGTTGTCAACAAAATATATAATAACACTGTTAGGTTAAAAGAACACAGCAAAAATTCACTGAACCCTCCTTTCCCACAGTTCTGGAAGGATCTGCAGATGATGGAGAACTACCTAGGCTTCATCTTTTCAACATATGTCTACACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144792-ZNF660:NM_173658:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF0013017=C1_1=WD(100=15.7),PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF0013017=C1_1=WD(100=15.4),PF087906=zf-LYAR=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF0013017=C1_1=WD(100=15.1),PF0142914=MBD=WD(100=31.9),PF134651=zf-H2C2_2=WD(100=6.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)