HsaEX0074147 @ hg19
Exon Skipping
Gene
ENSG00000179195 | ZNF664
Description
zinc finger protein 664 [Source:HGNC Symbol;Acc:25406]
Coordinates
chr12:124472590-124495988:+
Coord C1 exon
chr12:124472590-124472685
Coord A exon
chr12:124489425-124489482
Coord C2 exon
chr12:124495928-124495988
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCCCAACACCTCCAGATG
3' ss Score
8.35
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CAGGATCCTAAGGCCTTTGTAGTCCTTCAGCCACTGTGGGCCCTGCCTCTGCCTGTTCTTCTGGAATGTCTTGGGGGTTTTGATCCTGTCACTGTG
Seq A exon
ATGGGACCACCTAGTTGCAGGAAAACAAGCTCAGGGCTCCCACTGATTCTACATTATG
Seq C2 exon
ACCTGCAAATCCAAGAGACACATCTTTGGAAGATAAGAGAGCTTCTTCAAGACCAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179195_MULTIEX1-5/8=1-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTTGTAGTCCTTCAGCC
R:
TTTGGTCTTGAAGAAGCTCTCT
Band lengths:
142-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)