HsaEX0074149 @ hg19
Exon Skipping
Gene
ENSG00000179195 | ZNF664
Description
zinc finger protein 664 [Source:HGNC Symbol;Acc:25406]
Coordinates
chr12:124458433-124634337:+
Coord C1 exon
chr12:124458433-124458567
Coord A exon
chr12:124495928-124495988
Coord C2 exon
chr12:124634141-124634337
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTACAAATTCTCTCCTTCAGACC
3' ss Score
8.49
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GGCGCCCTGCGTCCGGCAGAGGAGGCGAGCATCCCGCTCAGGTGATGAGGAACCCCTCGCGCACCCAGCGCAGAAGGCTGCTGCCGCCGGACGCCTCCATTGTTTGACCACAACAAGGGCCGGATTCTCACCCAG
Seq A exon
ACCTGCAAATCCAAGAGACACATCTTTGGAAGATAAGAGAGCTTCTTCAAGACCAAAAAAG
Seq C2 exon
GCCGCACTTGGTGAGAGTCTTCACGGACCACAGTGTTGCACGAGGTGATTGTGTTTGCAGAGGTTTTTTTGTCCTTGAAGAGCACTTAGGGCTGGAGAGCAAGACACATGCTGACGAGCAGAAGCTGACAGGCTTGCTGCCATGTGGGAAAGTCCTTGGACGAGTTGTCTGCTTGCGGAGAGGTGTCTGCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179195_MULTIEX1-7/8=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCCTCCATTGTTTGACCA
R:
CTCTCCAGCCCTAAGTGCTCT
Band lengths:
145-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)