HsaEX0074152 @ hg19
Exon Skipping
Gene
ENSG00000167394 | ZNF668
Description
zinc finger protein 668 [Source:HGNC Symbol;Acc:25821]
Coordinates
chr16:31075134-31076409:-
Coord C1 exon
chr16:31076121-31076409
Coord A exon
chr16:31075893-31076006
Coord C2 exon
chr16:31075134-31075802
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCTCAGCCTCCTTTCTTAGTGG
3' ss Score
6.01
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AGATTCCAGTCTGGGGCGGAGGCCCGTACAGCTGTGCAAGGCCAGAATTCTGTGTGAACAGTTGCTGTCTCTGAGGACTAACCATCCAGAGGAGGAAAGAAAACACAAATGCTGGGGACCTGTCACTTCCAGACAGTGCCAGCTACCAGATTTAGCCCATTGGCTCAGCCCTTTTCTGGTCCCAGGTCTGTCTTTTCTGGGCGCTTGGAGACCTTCAGGCCAGGCCCACGTCTGGGTACACTCTTTATCCTGGCATAGTTCTTGGACACTGAGCTGAAGAAGGAAGATG
Seq A exon
TGGCTCTGCGGACACTTGGTCCAACTCCTTTCTTCAATGAGCAGATCAGGGAGGAAACGAACGCAGGATGTCAGAGCCAGGAATGCTGGGCAGGAAGGATGTGTGGGTTCCGAG
Seq C2 exon
AGAAACCCCGTTCACCAAGGCCATGGAAGTGGAGGCTGCAGAGGCCCGGTCCCCAGCCCCCGGCTACAAGCGCTCGGGCCGCCGCTACAAGTGCGTGTCCTGTACCAAGACATTTCCAAACGCGCCCAGGGCAGCGCGCCACGCTGCCACACATGGGCCGGCAGACTGCTCTGAAGAGGTGGCCGAGGTGAAGCCAAAGCCAGAGACAGAAGCTAAGGCAGAGGAAGCCAGTGGGGAGAAGGTGTCAGGCTCCGCGGCCAAGCCTAGGCCCTATGCGTGTCCGCTATGCCCCAAGGCCTACAAGACGGCACCCGAGCTGCGCAGCCACGGGCGCAGCCACACGGGGGAGAAGCCCTTTCCGTGCCCCGAGTGCGGCCGCCGCTTCATGCAGCCCGTGTGCCTGCGCGTGCACCTGGCCTCGCACGCTGGCGAACTGCCCTTCCGCTGTGCGCACTGCCCGAAGGCCTATGGCGCGCTCTCCAAGCTCAAGATCCACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167394-'4-5,'4-4,5-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.337
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=10.2),PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=PU(23.1=2.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTTCTGGTCCCAGGTCT
R:
GCGCGTTTGGAAATGTCTTGG
Band lengths:
246-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)