HsaEX0074152 @ hg38
Exon Skipping
Gene
ENSG00000167394 | ZNF668
Description
zinc finger protein 668 [Source:HGNC Symbol;Acc:HGNC:25821]
Coordinates
chr16:31063813-31074320:-
Coord C1 exon
chr16:31073659-31074320
Coord A exon
chr16:31064572-31064685
Coord C2 exon
chr16:31063813-31064481
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCTCAGCCTCCTTTCTTAGTGG
3' ss Score
6.01
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CCTGGCCACAGTACTTTGGTGACACTTTTCGTGGGGCTCTCTGGAGGACTTTTCCCAAGGCAGATGGAGAAAACTTCGTGAAACCCACTCCTTGCTATTAAAGGAAATGTTGTGGAATATAATTGGACTTAGGTTTTGCAGAGCTTGAGCATGGCCTTTTTGTCCTCCCACCTTCTGGTTCTTGAAGACATTGCCGGTGACCTGGCCCCAGACTAACACAAGGCGGGCGTATACCGTCAGCCTGCCTGGCGTCCCCTTGCCTCAGCACACACAGAGACCTCTTGCAAGATGCTTCTCTGCCGCCATAGGCTGGAGGTTCCCCGGGAACTTTCCCTTCCTTCCTAGCTGAGGAAGATCCCTCACTTCCGCTCGCCGCGCCACCGGTCCCACCTCCCCGCCCCCCGCTGGGTCCTAGCGCCGGCCCCTGTTTGGCAGGGTCCGGGCTCCGTCGGTGCGAGGAGCCGACGCCGACGCCACGGAGTCAGCACAAGTCTCATCAG
Seq A exon
TGGCTCTGCGGACACTTGGTCCAACTCCTTTCTTCAATGAGCAGATCAGGGAGGAAACGAACGCAGGATGTCAGAGCCAGGAATGCTGGGCAGGAAGGATGTGTGGGTTCCGAG
Seq C2 exon
AGAAACCCCGTTCACCAAGGCCATGGAAGTGGAGGCTGCAGAGGCCCGGTCCCCAGCCCCCGGCTACAAGCGCTCGGGCCGCCGCTACAAGTGCCTGTCCTGTACCAAGACATTTCCAAACGCGCCCAGGGCAGCGCGCCACGCTGCCACACATGGGCCGGCAGACTGCTCTGAAGAGGTGGCCGAGGTGAAGCCAAAGCCAGAGACAGAAGCTAAGGCAGAGGAAGCCAGTGGGGAGAAGGTGTCAGGCTCCGCGGCCAAGCCTAGGCCCTATGCGTGTCCGCTATGCCCCAAGGCCTACAAGACGGCACCCGAGCTGCGCAGCCACGGGCGCAGCCACACGGGGGAGAAGCCCTTTCCGTGCCCCGAGTGCGGCCGCCGCTTCATGCAGCCCGTGTGCCTGCGCGTGCACCTGGCCTCGCACGCTGGCGAACTGCCCTTCCGCTGTGCGCACTGCCCGAAGGCCTATGGCGCGCTCTCCAAGCTCAAGATCCACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167394_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.337
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=12.0),PF134651=zf-H2C2_2=PU(23.1=2.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGAGTCAGCACAAGTCTC
R:
GGCTTCCTCTGCCTTAGCTTC
Band lengths:
255-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development