HsaEX0074156 @ hg19
Exon Skipping
Gene
ENSG00000083814 | ZNF671
Description
zinc finger protein 671 [Source:HGNC Symbol;Acc:26279]
Coordinates
chr19:58234582-58238995:-
Coord C1 exon
chr19:58238759-58238995
Coord A exon
chr19:58238276-58238393
Coord C2 exon
chr19:58234582-58234708
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCGAAATTTGCTCAGGGG
3' ss Score
3.69
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTTGTAGCGGACATTTTGTTTCTGTCAGGCTGTCCCTGGCCGGGGTTCTGTAACGCTTGTGTGGGCCGCAGGTGGAGGTGTTGGGAAAGCGCGGAGGAGATGTTGTCCCCAGTGTCCCGAGACGCGTCTGATGCTCTGCAGGGACGGAAGTGCCTGCGTCCCCGATCGAGACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGAGCTAACGGACTCCGCGCGG
Seq A exon
GGGAGAACATTAGTTTGGGGTGGGGACTGCGAGGATGGATACGAGGAGACCGGTAAGGAGGCTACTGCAGTGGATTCCAGGAATGCTTTGGTGGTGGATGTACCAAGAGTAATGGCAG
Seq C2 exon
GGCTGTGTGGTCTTTGAGGATGTGTTTGTATACTTCTCTCGGGAAGAATGGGAGCTTCTTGATGATGCTCAGAGACTTTTGTACCATGATGTGATGCTGGAGAACTTTGCACTTTTAGCCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083814_MULTIEX1-1/4=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTTCTGTAACGCTTGTGT
R:
AAGCTCCCATTCTTCCCGAGA
Band lengths:
253-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)