HsaINT0188062 @ hg19
Intron Retention
Gene
ENSG00000083814 | ZNF671
Description
zinc finger protein 671 [Source:HGNC Symbol;Acc:26279]
Coordinates
chr19:58234582-58238995:-
Coord C1 exon
chr19:58238759-58238995
Coord A exon
chr19:58234709-58238758
Coord C2 exon
chr19:58234582-58234708
Length
4050 bp
Sequences
Splice sites
5' ss Seq
CGGGTGGGT
5' ss Score
6.14
3' ss Seq
TCCTGTCCCTTTTGTTGCAGGGC
3' ss Score
10.67
Exon sequences
Seq C1 exon
CTTGTAGCGGACATTTTGTTTCTGTCAGGCTGTCCCTGGCCGGGGTTCTGTAACGCTTGTGTGGGCCGCAGGTGGAGGTGTTGGGAAAGCGCGGAGGAGATGTTGTCCCCAGTGTCCCGAGACGCGTCTGATGCTCTGCAGGGACGGAAGTGCCTGCGTCCCCGATCGAGACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGAGCTAACGGACTCCGCGCGG
Seq A exon
GTGGGTGCTGCGTCCTCCGGGCCCTCAGTCACCCTTTCTCCGACTCCGAATCGTAAAGTGCCTGCAGCCCCTGTGTCCCAGGACAGCGACGCACTCTTGGGGCGGGGTCCTATCTCGGTGTGGGTGGGTGTGGGAGAGTTACGGGCGGAGGGGACGGCGCAGGTAAAGGCTCGGGGGTGCTGCTGACCCCCAAACATTTGGGAGACAGGGTTCTCATCAACACAGAGCAGAGTTTGAGGAACTGTGACTGGAATGGCAGGCTGAGAAGTTGTCGCTTCATTCTGAGGGCGTTGAGATTAACTGAGGGTTTTGAATAGAAGGACGTGATCTTAGCTGGGATTTTAAGTGTCTCGAAATTTGCTCAGGGGAGAACATTAGTTTGGGGTGGGGACTGCGAGGATGGATACGAGGAGACCGGTAAGGAGGCTACTGCAGTGGATTCCAGGAATGCTTTGGTGGTGGATGTACCAAGAGTAATGGCAGGTGAGTGGGTAGAAGTGATCATATTCTGGGTAGGTTTTAAATTTGAAACCAACAGGATTTTCTGCTCCATCATATGCAGCTATGACTGAAAGTAAGGCATGAAAGAGCAAGGTGTTTTTGTTGTTTTTCCATGAACGTTTGGATTTTGGAATGGTGACTTTGAGATGTCTCAGAGTGGAGGCTTCCTCACTTAGGCAACTAGAGAGGAAGGTCTGAAGTTGTGGGGAAGGGGCTGGGCTTAGAATATCTTTGGGGTGAAGGGAGCGGTCTGGAGTAGGTCAAGGCCAGGAGGTCAGATTTAAGTGGGGCAGTCTTAAGTATGTTATTTCATATCTCTGGGGTAAGAGATGAGAAGGCTGGGACTGCAGGGCAGGGAAGAGGGAGTGGGCATTCTTGAGACTCCCCCCAGAAGAGAAGGGTCCTGCCATTTGAAAGGGTTCTTTTCAGTGTTTGCAGGAGGAGAGAGCTGTAGGGTATGAGGAGTTTGGCCTGGGATGGCAACGATGGGTGGTGTGCTATTGCTACTATCTGATTATCTCACCCTCATTTTGTGTGTTTTCTTTTAGTTTTAGTTTATTTATTTTTTTTATTTTTTTTGAGACGAAGTCTCACTCTGTCGCCCAGGGTGGGATGCAGTGGCTTATTGCAACCTCTACCTCCCGGGTTCAAGAGATTCTCCCGCCTCAGCCTCCCAAGTAGTTGAGATTACAGGTGCCCACAACCACCCCTGGCTAATTTTAGTATTTATAGTAGAGACGGGGGTGGGGAGGTGGGAGGGGTGGGGTGGGGTGGGGAGGTGGGAGGGGTGGGGTGGGGGCGGGGGAGTGGGGGGGACGTTCACCGTGTTGGCCCAGGTGGTCTTGAACTCCCGACCTCAACTGATCCACCGGCCCCAGCCTTCCAAAGTGTTTGGATTACAGTTGTGAGCCACTGCACTTGGCTTTGGTTTTATTTTATTTATTTATTTTTTTTTTGGAGACGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAATGGTGCGATCTTGGCTCACTGCAGCTTCTGCCTCCCAGATTCAAGTGATTCTCCTGCCTCAGTTTTCCCAGTAGCTGGGATTACAGGCATGCATCACCATGCCCAGCTAATTTTTGTATTTTATTAGATAGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCGTGACCTCAGTTGATCCACTCCCTTCGGCCTCCCAAAGTGCTGGGATTACAAGAGTGAGCCACCATGCCTTGGCCAGGTTTTGTTTTGTTTTGTTTTTTTGAGATGGAGTCTTGCTCTTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTGTCTCCTGGGTTCAAGCAGTTCTCCTACCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCCACCACCACACCCCGCTAATTTTTCCATTTTTAGTAGAGACGGGGTTTCACCACGTTTCCTAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACCGCAACCTCTGCCTTCTGGGTTCAAGCAATTCTCTTGTCTGCCTCCTGAGTAGCTGGAATTACAGGCACCCGCCACCACGCCCAGCTAATTTGTTTGTATTTTTGGTAGAGACGGGGTTTCACGATGTTGGCCAGGCTGGTCTCGAACTCCTGCCCTCAGGAGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGTCATCATGCTTGGCTGAGACCCCATTTCAAAAAAAAAAAAAAGTTCACTACTTCTCCCAGTCTTGCCTAGTGTAGTAGAAGGATCTCACGAATCCATCTGGCCAAAGATTTAAGGTGCTTCTCTAATCTTTGTGTTTGTCCAGAATGCTGTCTCTGTTTTTGGTAACTCTCTGGAACTTAGGATGTACTACATTCTGTCATTATCCTAAGGCCAGAAGGTAGGAACCAGACTCTTTTGATGTAGCTGGAATGTGTTGAGGGTGTTGAATGTGTTCCAGTTTCTTCCGTTTTCATGATGCAGCTGAGCATGGGTATTTATCTCCTGCTGCCTGCATTAAGTTAGTTAGAGATCTGTGTCAAATGCCTAAAGTCGGCCAGGCGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACATGGTGAAACCTTGTCTCTACTGAAAATACAAAAAATTAGCCGGGCATGGTGGTGGGCGCCTGTAGTCCCGGCTACTCGGGAGGCTGAGGCAGGAGAATGGTGTGAACCTGGGAGATGGAGCTTGCAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGTGCAAGAATCTGTCTAAAAAAAAAAAAAAAAATTGTTATGTGTCTTCTGACTGCCTCACTGACCAGCTGATCCCCATCCTTCTCCCTCTCTTTAAGCGTTCCTATTCCCTGACACACAGCAATATTGAAATCAGGTCAGTTAATAACCCTACAGTGGCCTCTAAGAGTTCAAGTTAAAGGAGTAGTTACACATCTCTCACTTTAAATCAGGGGTGTCCAATCTTTTGGCTTCCCTGGGCCTCCAGCACTAGGGGTTGCATTTCAACATGAGATTTGTAGGGGATACACATCCAATCCATATCAAACAGTGGTACAATGTGCAACAAAGAAATGGAAGAGGGTTGAGGATACCTGAGATCTGCATGTGGTTTGAGGTGCCTGTGATTGAAAAAAGGAACAGGGCCAGATTGGGAGGCTTTCAGAGCAACAATAGGGCTTTCCTTGGCAATGGGGCCATTGATGGTTTGGAGCAAGATGGGATACTGATTGTTGGCAAGCACTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCAGACTGGAGTGTAGTAGCATGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAGTTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACACACCACCATGCCCAGCTAATTTTTGTATTTTTTTTTTTTTTTTTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATAGTCTCGCTCTCTTGACCTCGTGATCTGCCTTCGGCAAGCACTCTTAATGCTATGTGTAGAGTGACATTTGGGGAGTCCAGGGAGATGGGGTGGGCCAGTAGGGTGGGGGGGAAGCTGGAGATGTGAGGGAGACATAGTCCAGAGTGATGTGTATGAGAGGAGGGAGTGTGAGCTGACGGTCCTGTGACTTGGGGCTTAACTGAGAAAAATGAGCCTAGGTTCATACCTGGGATTTGTGATCTTGGGTACCCCAGGGGAGTTGGCTGGCTCAGAGTGTAAATGGCATTTATCTGTCAGCCTGTCTGTTGTTGTGGTGGGCTGACACAGTGATTGCTGGGGTGATCAGGAGAGAGTGAGGATCAGTGGTACTAGTGCCTGGTATCTCTGACTTGGGAACCTGGGAGGTTAGTTAGCAGGATGTTGTGGGTAGGTAGACTGGGGATCATTGGTCAAGAGACTTTTTATGGTCCTTCCTGTCCCTTTTGTTGCAG
Seq C2 exon
GGCTGTGTGGTCTTTGAGGATGTGTTTGTATACTTCTCTCGGGAAGAATGGGAGCTTCTTGATGATGCTCAGAGACTTTTGTACCATGATGTGATGCTGGAGAACTTTGCACTTTTAGCCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083814-ZNF671:NM_024833:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)