BtaINT0166067 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040358 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:HGNC:33106]
Coordinates
chr18:64859081-64862504:-
Coord C1 exon
chr18:64862427-64862504
Coord A exon
chr18:64859208-64862426
Coord C2 exon
chr18:64859081-64859207
Length
3219 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGCTCTCCCCATTGTGGCAGGGG
3' ss Score
6.59
Exon sequences
Seq C1 exon
CCTGTCGCTCTGCAGCCACTCGCCTTCCCCAGTCCGCAGGTGCCGATGGCGGCCGCGGTGCTGACGGACCCGGCGCAG
Seq A exon
GTGGGTGCTGCGCCCCCGGGTCCTCCCTCGACCTCCGTCTCTGAATCCTGAAGCCTCGAATGAGGGAAGCCTCAGAGCCCCGCAGCTCTGGGCCCTGTGTCCCGACCGTAGGGGCGCTCTTGGGCGGACTTTTCTGACAGCCCGCGTGATGGGATGACAGAACGTTACAGAAGTTGGGGCCGGAATGTGCAGAGCATTTGGGAAACCTCGAGTCTGAGTCTTTGGTGTCTGAAAAGATCAGAGGGTCTGAGCCGCTGTGCCTTCGTTCTGAAGGTGATGGGAGCACGGAAGGTTCTAAACAGAGACCGTATCTGATGGTTTATGTAGACTGTCCAGGTGTGAAGAAACTTGACGTGAGAGAGAGGACAGTGGAGCATAGAAATGTTGAGAGATGGTCCAAGGCCACGCAGTTGTTAGATGGCCTAGTGGACTGGGGCACACAGGGTAGACTCAGCTCCAGGTCCTTATGGCCGAGCAGCAGCAGGAGAGAGGCCCGAGGCTCTCTTGGGGCTAGATCGTGGTTGCTTCTCTCTCAGTTTCCCTGTATCTACAGGTTCCCCAATCTCAGAAGTAATTGTGGGATTTATACAGTGAGACAAGGATGTCCAGTCTCTCATCAATTCCACCTTCACCTTCACCTTCACCCATCAGGGCCCCAGGATTGTGGTTTCATAGAACGCGTTACCTTGCACTCTCGCAGCTCTTGAGTCTGAGGACTCCTGAGAAACACCAACCTCAGAGTTCTCAGTCCAGTCCAGGGGTTATAATGCAGGACACTGACTCCTGGTGACCATTGAAATAAGGCGTGGCAGTTTGTTCCAGGCACAGGAACCAGCATACCTGATGGTGAGATTGAATTCGGAATTAAAAAAAAAAAAAACTACAGATCATCACCAAGTCTGGTAGCAGGAGTCAGGCCTGAAATGGCCAACTGAGCAGCCAGGCCTCTGTTCTGAGGGTGGTGTAGCCATGGCAGATGTGGAGCAGAGGAGCGAGGTGATCTGATCTGGGTTCTCACAGCTTCCCTGTAGACGCCATGTTTGATCCCTGGGCTGGGAAGATCCCTTAGAGAAGGAAATGGCAATCCACTCCAGTGTTCTTGCCTGGGAAATCCCATGGACAGAGGAGCCTGGCGGGCTACCATCCATGCGGTCGCAAAGAGTTGGGCACAGCTTAGTGACTAAACAGCAACAAAGACGATTCTGAATTCCAAGTGGAGAACAGGCTATGTGGTGAGGGTTGAGGGAATTAGGATAGAGGTGAGGAGAAGGACGGGAGAAGGCTGCTTCTGTATTCCAGGCGAGTTAGAATAAATGGTTGGGCCAGAGGGGTCGCTGTGTAGACGGGAGAAGTGATTGGGTCAGATTTTCTGTGTAAGAAAGAGACAGCCCCAAGGTGTTAGGCCATATCAGTCAGAAGGGTAGAAGCGCCATCAGCTGACGTGGGCAAGTTAGTGGTAGAAGGAACTCTGCATATGGGTATCAGTAGTTTATTTGTGGCCACGTGGAGAGTCTGAGATGTGCCAGAGAACCCTTGAGATATCCAATGAGCTGCTGGACACGGGGCTGAAGTTATATGGAGGGGTTCAGGAGAGAGACATCCAAAAAGTAGAAGATGGCATGTACACAGGTTTACAAGGGGGAAACTCCAGCACCACAACAGTACCATCCTGCCGCGTCTGGCACAGAGGGTGAGAAAGACCTGATACAGTGAGCATGTGAGGAAAAAACAGACACATATAATTTGGCAACCGGGGAGTCAGGGGACCCTCCTGCGCTCCATGACAGGAAGACAAAATGGCTCCTTTCAGCCCGCCCTTTTATTGGCAGAAGTCACATGAGATCATTAGGGAATAGCTATACTGGGGAGTTTGATCAGCGCACCGTAAAGAGGGAGTAAAGTTATGGTTCTGCTGTTGATTAGGAATATCTTGTTTTGTTTCCATGGGGACGGACTCAGGGGCAGGCAGTGAAGCGCAGCAGAGAGCACGTCCCACCCGAAGAATGTCCGTTTGGCATACTTACTAGAACAGTCAAGAGAGTGCAGTTTGCCGCACCCTGGAGTCATGAGGCAAGGTGCTCGTCTCTGCTCCAGGCTGCAACACCCTCCTGCAGTCTCCCGGGAATGGTTTCCTGGTAACGGTTACTCAGTAACAGGTGCCTGCAAATGGCTGTACGCCAGCTCCGCACCTAACCTGTTGATTTCCTCAAGGTTTGGCGGCATGTGAACTACGTTACCCAGCAGGCTCTGCTCTCTGGGGGCCAGTTAATGAGCTAGGAAGATGATGGTGGAAGCCAATAACTGGGTAAGCGGCCAGAGTTGTGATCAGATCAGATCAGATCAGTCGCTCAGTCGTGCCCGACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTGAGACTCAACGTCCATCGAGTCAGCGATGCCATCCAGCCATCCCATCCTCTGTTGTCCCCTTCTCCTCCTGCTCCCAATCCCTCCCAGCATCAGAGTTCTTTCCAATGAGTCAACTCTTCGCCTGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACGGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCGTCAATTCTTCAGTGCTCAGCCTTCTTCACAGTCCAACTCTCACATCCATACATGACCACAGGAAAAACCATAGCCTTGACTATACGGACCTTTGTTGGCAAAGTAGAGTGATCTAGAAGAGCAATGTGCATGTGGAAAAGGAGTGTGAATTGATGGCACTTGGGCCCTGATTTGAGGGGCTTAAGGAATAAAGATGAGCCTAACTTTGGTTGTCTGGTAATCATGATTTTAGCAACTTTCAAAGAACTGCCTGGAAGGAGGTGGGTGGGGGTCTCGTACGCCATACCAGCCCCAGAGTTTAGACAGGCCTTTCTGCCCCACCTGCCTGTTGTTGCTGTGGGTGGACACAGTGACCAACGGGACCCTGAGGAGAGAGCAGACGTATATGGCACCTGGTGCTGGTGTTTGCTCTGAGCTGAGGAGCTGGGTGGGAAGGAATGGTCAGGGGAGTTCTGTGGCGGCAGATGGGATCCTTGGGAAGGAGACTGCTCACAGACTGCTCTCCCCATTGTGGCAG
Seq C2 exon
GGGAATGTGACCTTTGAGGACGTGTTCGTGTCCTTCTCCCAGGAGGAGTGGGGGCTGCTTGATGAGGCTCAGAGGCTCCTGTACCGCGAAGTGATGCTGGAGAACTTTGCACTGATGGCCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040358:ENSBTAT00000064597:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development