HsaINT0188344 @ hg19
Intron Retention
Gene
ENSG00000197128 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:33106]
Coordinates
chr19:57987028-57988040:-
Coord C1 exon
chr19:57988002-57988040
Coord A exon
chr19:57987155-57988001
Coord C2 exon
chr19:57987028-57987154
Length
847 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGCTCTCCTGATTGTGGCAGGGG
3' ss Score
4.39
Exon sequences
Seq C1 exon
GTTCCCATGAACTCAGAAGTAATTGTGGACCCTATACAG
Seq A exon
GTGAGGGGAGAATGTCCATGCTCTCACCGATCCCACCCCCACCCAATACGCTCTCCAGCATTGTGGTGTTATATAGAACACTCTCCTGCTACTCTCCGATCTCTTGGGTCTGAGGACTCTGGAGAAGCCCCAAGCCCAGGGTCCTGACTCCGGGCCAGGGGTTTTATGGAGGGGTTTCCATTTCTGCCAACCATTGGAATAAGGTTGGAAGGTTGTTCCAGGCACAGGAACCAGCCTGTGCAAAATACTTAGAGGTGAGACTGAGAAGGGAGTTTTCAAGAAATTGCAGGTCTCTGTCATGTCTGGTGGGAACCAAGAGCAAGGGGGCGGGAATCATCCTGAAATGGCTTAAAGATGATTATGTAGATTGGGAGTTAAAAGAGAATATTCATTTCACAGTGGTAGTGCATTTAGTGAGCCAGGAAAGTGATGGTGGAGAGCCAGAGTTGTGAGATAACTGTGATCCAAAGAGTGATGTACATATGGAAAGAAGTGTAGACTGATGACGTCTGGGCTTAAAGGAGAAAGGCAAGCCCATCTTTGGTTGTCTGGTAAGCATGATGTTAGTGACCCCAGAGGAATTTGCTTACAGAAGGGTGAGGCCCTGTATGCTAAGCACAGAGCTTAGAGGGTGACAACTTCTTCACCTGCCTGTGGTTGCTATGGGTAGACACAGTGATCCATTGGGACCATGAGGCGAGAGAAGACACCAATGACATCTGGTCCTGATATTTCCTGAGTTGAGGAGTTAGGTAGGAGGGTGTACAGGAGGGAGATGTGTGGGGGCACGGATGGGGGTTCTTGGGAGAGATGCTGCTCATGGACTTGGCTCTCCTGATTGTGGCAG
Seq C2 exon
GGGCAGGTGAACTTTGAGGACGTGTTCGTGTACTTCTCCCAGGAGGAGTGGGTGCTCCTTGATGAGGCTCAGAGGCTCCTGTACCGTGATGTGATGCTGGAGAACTTTGCACTTATGGCCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197128-ZNF772:NM_001024596:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)