HsaEX0074327 @ hg19
Exon Skipping
Gene
ENSG00000197128 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:33106]
Coordinates
chr19:57980954-57988871:-
Coord C1 exon
chr19:57988645-57988871
Coord A exon
chr19:57988002-57988040
Coord C2 exon
chr19:57980954-57985789
Length
39 bp
Sequences
Splice sites
3' ss Seq
AGTCTCCCTCTTCCCCACAGGTT
3' ss Score
11.36
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTTCCAGAACGCAATGTCAGACCTGAGGTGACAGAAAAGGGAAAACGTGAGAGAGTGTCTTCTTCCCTGAAGAGAGGTGGGCCTGAGGCTTGACAGTGGCGCTGCCTGAGTGACCTAGCCGCTGGGCTGGGCCCTGGACAGCTGATCCCAGGTTCCTGCACTTGTCGCCACCCTTCCGTAGTCCACAGGCCTGATGGCGGCGGCTGAGCCGATGGGCCCGGCACAG
Seq A exon
GTTCCCATGAACTCAGAAGTAATTGTGGACCCTATACAG
Seq C2 exon
GTTGTTGGCATGGAATGGAGGATGAAGAGATACCTTTTGAGCAGAGCTTTTCTATAGGAATGTCACAGATCAGGATTCCCAAGGGAGGTCCTTCTACTCAGAAGGCTTACCCCTGTGGGACATGTGGCCTGGTCTTAAAAGACATTTTGCACTTGGCTGAGCACCAGGAAACACACCCAGGGCAGAAACCATACATGTGTGTGCTGTGTGGGAAACAGTTCTGCTTCAGTGCAAACCTTCACCAGCACCAGAAGCAGCACAGTGGAGAGAAACCCTTTAGAAGTGATAAGAGCAGGCCCTTTCTTCTGAACAACTGTGCTGTGCAATCAATGGAGATGTCTTTTGTGACAGGGGAGGCTTGTAAGGACTTCCTAGCCAGCTCAAGCATTTTCGAGCACCATGCCCCTCACAATGAGTGGAAGCCACACAGCAACACCAAGTGTGAGGAGGCCTCTCACTGTGGAAAAAGGCATTACAAATGCAGTGAATGTGGGAAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197128-'0-8,'0-0,1-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.309 A=0.014 C2=0.064
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0214814=zf-UBP=WD(100=24.8),PF134651=zf-H2C2_2=WD(100=6.3),PF099474=DUF2180=WD(100=14.1),PF134651=zf-H2C2_2=WD(100=6.8),PF0009621=zf-C2H2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF0013017=C1_1=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=6.8),PF127602=Zn_Tnp_IS1595=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=6.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCAGGTTCCTGCACTTG
R:
CTCTTCATCCTCCATTCCATGCC
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)