HsaINT0188345 @ hg19
Intron Retention
Gene
ENSG00000197128 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:33106]
Coordinates
chr19:57986392-57987154:-
Coord C1 exon
chr19:57987028-57987154
Coord A exon
chr19:57986515-57987027
Coord C2 exon
chr19:57986392-57986514
Length
513 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTGTTCTATCTTTCCCTTAGGAC
3' ss Score
12.12
Exon sequences
Seq C1 exon
GGGCAGGTGAACTTTGAGGACGTGTTCGTGTACTTCTCCCAGGAGGAGTGGGTGCTCCTTGATGAGGCTCAGAGGCTCCTGTACCGTGATGTGATGCTGGAGAACTTTGCACTTATGGCCTCTCTGG
Seq A exon
GTAAGGCCGTCACATCCACCCCAGTGACTTGGACTGGGTCCTGCCCTTCCCCTTTTTTTCAGGGCATCTTTGTCCTTCCTACATCAGAGCCGTGGACACTGTCTCATTTCTTAGTGCCTGGAGTAGGTTCTGTGAGTGCTGGGCTTGGGCTGTTTGCACTCCTACTTTCTCCTTTTGAGCATTCCCAGCGCTTGCTGTCTCAGAGCCTTGCAGGCATGGATTCAGGAGTTATGCATTGTATTGTCAGCCCAGTGGGTCATATCCATCTTGTCCTTTCCCTGTCTGAATTCCTCTGTCTGTATCCATGACACCTCTGTGCCTGGGATTCTGCGCTCTTCCTTTAGCTGACATTTCCTGTGGCCTGCCTATGTCAGGAATTGTAGGGACCATTATGGTCGCTACTTGCTAGGACCACTGCACTATTCCTGCAAGACCTTACTCTGAGATTATTTTAATAATATTTAGTTTTCTATATGGGTTACCCAGACCAGTGCTGTTCTATCTTTCCCTTAG
Seq C2 exon
GACATACATCTTTCATGTCCCACATAGTTGCCTCACTGGTGATGGGTAGTGAGCCCTGGGTACCTGACTGGGTGGACATGACCCTAGCTGTTGCCACAGAGACTCCAGGTGGGAGTGACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197128-ZNF772:NM_001024596:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.055
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGGTGAACTTTGAGGAC
R:
CACCTGGAGTCTCTGTGGCAA
Band lengths:
238-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)