BtaINT0166068 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040358 | ZNF772
Description
zinc finger protein 772 [Source:HGNC Symbol;Acc:HGNC:33106]
Coordinates
chr18:64858451-64859207:-
Coord C1 exon
chr18:64859081-64859207
Coord A exon
chr18:64858574-64859080
Coord C2 exon
chr18:64858451-64858573
Length
507 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTGTCCTGTCTTTTCCTTAGGAT
3' ss Score
12.38
Exon sequences
Seq C1 exon
GGGAATGTGACCTTTGAGGACGTGTTCGTGTCCTTCTCCCAGGAGGAGTGGGGGCTGCTTGATGAGGCTCAGAGGCTCCTGTACCGCGAAGTGATGCTGGAGAACTTTGCACTGATGGCCTCACTGG
Seq A exon
GTAAGGCCCTCTTGTCCCCTGCAGTGCCTGGACTAGGCTCTCCCCCTTCCCTGTTTCCTGAATCAGAACCATAGGCAGTACCACCACCGCCCTGGTTCCCTGGAGTAGGTACCATGGGTGCCAGGTGTGAACTGTGGGCTCTAGCACTTCTGGTTTCTGAGTGCTCCCACGACCTGCTGCCCTGAAGGCTTGCATGGAGGAATGCAGGCGTGAAGTGTCCAGTTGTCACCCAGTGGATCATGTCTGGTTTGTCCTCTCCCTGACTGGGTGCCTCTGTCCAGATTCATGGCACTCCTGTGCCCCAGATTGTGTCCCCTTCCTCTAGCTGACATTTCTCATAGCCTACCTGTATCAGGAATCCCAAGGACCCAGTACAATCACTACTTGTTGGGACCACTAGGCTATTCCTGCAAGACAATACTTCAGAGATATTTTCATATTTAGGTTTCTTTTCTGAAGGGTGGGTCACCCACACCTGGCCATTTACCTGTCCTGTCTTTTCCTTAG
Seq C2 exon
GATATGCATCTTCCATGTCCCATGGGGTTTCCCCACAGGAGCTGGGCAGGGAGCCCTGGGTCTCTGACTGGGCCAACACAATTCCAGCCCTGACCAGAGAGGCTCAGAGTGCAGGTAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040358:ENSBTAT00000064597:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.190
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATGTGACCTTTGAGGACG
R:
GCTACCTGCACTCTGAGCCTC
Band lengths:
246-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development