MmuINT0180316 @ mm10
Intron Retention
Gene
ENSMUSG00000030393 | Zik1
Description
zinc finger protein interacting with K protein 1 [Source:MGI Symbol;Acc:MGI:108070]
Coordinates
chr7:10487229-10492405:-
Coord C1 exon
chr7:10492279-10492405
Coord A exon
chr7:10491009-10492278
Coord C2 exon
chr7:10487229-10491008
Length
1270 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
CATCAGTAATTCTCTTTCAGGTT
3' ss Score
7.55
Exon sequences
Seq C1 exon
GGCTGTGTGACCTTTCAAGATGTGGCCATTTGCTTCTCCCATGAAGAATGGAGACTTCTTGATGAGACTCAGAGGCTCCTGTACCTCAGTGTTATGCTGCAGAACTTTGCACTCATAAACTCCCAGG
Seq A exon
GTAAGGCTCTCACATGGTCCTAGTATCCTGAAACCCCCTGTCCTCTTTTTCCCTAGGCTGACTTATCTTTCCATACTAGACTTTGAGACCTATTAATATCTGCATATTCTCGGTATATATGTTATGTGTGATAGCGCTGAACTGTGTCTACTACCTCAAGTAAATCTCTCTCTGTGTAACCTAATACTTTCTTCCCGCTTTATGGAAGTTGGGTATCTTGTGGTCATCCTAATTAATGGGTGTCATCTTGCTTGTCTTGCCACTAGCTCTGTCTACAATCATGACACTTGGCATGACAAGTGCTTAGCAGTGACCAGCTTGCTTTTTTATGACTGCATATGGCATGGCTGCAGTTTTGGAATCATGTATTTTTTTCTTGCTAGACATTGATTTTGGATATTTTAAAACTAGTGTTTTCTTTCCTGGGATCTATAGCAATCTTTTGTGAGATACCCTTGTTAACCACTTCTTATGTCTTTTCTTTCTTGTGAACCTTTGTCATGATGTCACATGTAGTGACAGCATTTCATTAGGTCACATGTAATGATATCAAGCTCGGGATCTGGTTCTTCTGAAAAGCAGCCATAGCTTTATAGGAGGCCTGGATGTGATAAGTGCCATCTAGAGGAAGGCAAAACATCCAGGCTACCTTCCAAAACATCCTGTGTCCACCAATTTAGGTGCAAGTACTACCAGCCAAGCCTCATTTTCATATTATCTTCACCAGACATGGTAGTGTTCTGCCTTCTAACTTTATCTATGATCTCTGTCACCTGGGTATCCCCTTCTCCATGCGGCTCATATTCTTCTGTGCTATACTGTTCCTCTGTGGTTCCTTTGTGGTTCCTAGAACTACCTCAGACACAATTCTGAGCACATGCTATACATTTTTGATTGGAGTTCTGAGGCTTGCATGTAACCTATTTTCTGTAAAGCTTACATTTAGCAACAGCAAATGACATCCTGCTTCACTCTGTCATAAATTTTATGGATTTGGAAGCTAACCATGATGAATGTATGAATATTGTGTTCTAGTATCATATGGCCATTGGTAAAAGAGTTATAGATTATGCCCTTGTGGTTCATTTGGTGGCCTTTATTCTGTGAGGCCTTCCCAGTTCTGTTCTCTTTAGAGACCCGATGTTTCCATGCAGATCCTTCCTACCCATCCATTTGTCTTTGGGGGAAACATTCTGTGGAGTGTTCGTATGCTTGGGCTTCCTCCTCTGAACATAGTCAACATTGCATTTCATCAGTAATTCTCTTTCAG
Seq C2 exon
GTTGTGGGCATAAAACAGAAGATGAAGAGCGAAGGGTTTCTACACGAGCGTCAAAGGGTTTGAGATCCGAGACCACACCGAAAACTAACCTCTGTGAAAAGTGTGTCCCGATTCTGCAAGACATTTTGTGCCTGCCTGGTCTACCTGGGCAGAAACATAGTACAGAGGCAAGTTCAAAAGTTGATCAGCACCAAGACCATAATAGTACAGGAAAACCCTTGGAGAAGAATGCTGACAGGTCTTCATACCTGTTCTACCTGTCAGCAAAGTCCTTCCCCAGTTGGGATGTTGAAAAAGACCTCCCAGATATACTGAGCCTTCTGAAGTCTCAGGTCTGTCCCAAAACTAAGAAGTACAGAAAAAGCACTGAGGGTAGGAAAGAAACAAGTCATGAAAGTGACAAGTCAGAAGAGTGTCAGAGCCTTTCCAGTCAAAAGCAAACACTTGCTCACCACCCAAAAACCTCCAATGGAAAGAAACTTTATGAGTGCAGCAAATGTGGAAAGACCTTCCGTGGCAAATACTCCCTTGATCAACATCAGAGAGTCCACACCGGAGAGAGGCCTTGGGAGTGTAGAGATTGTGGGAAATTCTTTAGCCAGACCTCCCACCTGAATGATCACCGTAGAATACACACTGGAGAGAGGCCTTATGAGTGCAGTGAATGTGGGAAATTATTTAGACAGAACTCCAGTCTTGTTGATCACCAGAAAACTCATACTGGAGCAAGACCATATGAGTGTAGCCAGTGTGGGAAGTCCTTTAGTCAAAAAGCTACACTTGTTAAACACAAGAGAGTTCACACTGGAGAAAGGCCTTACAAGTGTAGTGAGTGTGGGAATTCCTTTAGTCAAAGTGCCATTCTTAACCAACACCGGAGAATTCACACTGGAGTAAAGCCTTATGAATGTAGAGAATGTGGGAAATCTTTTAGCCAAAAAGCTACCCTTATTAAACACCAGCGAGTTCACACTGGAGAAAGGCCTTACAAGTGTAGTGAGTGTGGGAAATCTTTCAGTCAAAGCTCCATCCTTATTCAACACCGGAGAATTCATACAGGAGCAAGGCCCTATGAGTGTAGCCAGTGTGGAAAGTCCTTTAGCCAAAAGTCCGGTCTCATTCAGCATCAGGTAGTTCACACTGGAGAAAGGCCATATGAATGTGACACATGTGGGAATTCTTTTAGTCAGTGCTCTAGCCTCATTCATCACCAAAAATGTCATAACGCTTAAGAAACCTCATGAAAGCAGCAAATGTGGATAAGCCTTCAGCTGAAGGCCTAACATCATTTAGCTCCTCCAAATCCGTACTTGAGAAAAAGCCTTAGATTTATAGGGAATGCCCTCTTTTTGGTTTTGCTTTTGTTTTTTGTTTTTTAAAGTACTATGACACTAGAACCTTTGCAGAGGATCCAACTACAATGTAAGGTTGATCTTCCAGTATCCAGGAATCAGATTCCTCAGGAATTCAGGCACAAGTAGGTTCAGCAACTGCTTTGCCCATCCTGAACTGGCCAAGACCTTTGCCATTTTTGTACCAGTGTTTGTGGTAGAAGCTATCAGTCGTTCTCTACCACATGACCAGTGTGCAATGATTACACCATCATGGTAAGGAAAGGCAAACTGCAGATTGCCTGGAAGAATTCTTCAATGGAGGATTTATGGAAAATTGGTCCCCCAGTTTTAACTGATTAAAATGTGGATATGACTAAGATTTCACCAAGAAGATCAAATTTATTGTCTGCTAAAGATGTCTAGAATTTGCTTCCCTGCTTCTTTTAAAAAGTAGCTTTTAATCTGTGTCACATGACAGTTAGGTGAATGTTTCCAGCCTTCTGATTATCAGTTGGTCACTGCCTTCTCCCCGTTGCTCTGATTTGTACACTGATAAATGCCTTATCCCTAAAGCTACCTTACTCTTAAGAGTGCAGTTTACTAAGTGGGAAGGCTGGTAAACAGACTGATCATTTTAGGAAAGAATGGAAAGCTTTTATAGAGGGTCTCAACTTGGTTTACCTCTGCACGGACAGCAAAATAAAGAAAGCAAATTTGTATTGCTTCCCAGGCCAACAGCTGGGACTTCTTTATTATAGTTTATGAATAACTGAATAAGTATTCATGTACATGAAGATCTAGTTGAAAACTTTCTGTGATCATCTCAAGAAGATGTCTGTTATTTCCATAAGCTCCTTTACTTGTGGAAATGAAATGAATTGGCTCATTTCTTTTTCTCAAAGGATGTCCTAAAAATGCCTATGATGCAGAGAGACAGCTCATAAAGCTGTATAAAGAGTGTGCCTGGATAGGAATTATTCCATAGGCACCAGCCAATAAGATGACCACTCATGAGGTGATCAGAGCTAGATGTGAATCATCATTGGCATACAAAAGATGGGTATAGTGGAGTCTTCAGCCAGCCAGATGGAATGTGACTCTTTTAAAAGTGCACACAATCTTTGTCTTTGGCTGAATTCACAGGACTTAAAGATCTTTGTATTTACAATAGCTGAGGTCATTGTCAAAAATGGTATGGTTTTGTGGGATAGTGGAGTTTAACTTGATCATTTACCTCCAGTCTTGTTATAGAGATAGGAAAATAAGGAAATGAAGATTCTTTAGTCTTAGAATGTAGCTGTTATAATTGCATTCCAGCTGCTGTGTTTGCAGTCTGGTATTCACAAATGTCTCTGCCATTTCCTGCATTAACAAAAGGCTGCCCTTATCTGTATATGAGGACAGAGTTCAATCAAAATGGGGGATACCAAGCCTTCTGGTTTGCAGAAATTAGGAGTTCTGAGCTTTGTACTTTGAGTCACTTTTTATAAAGTTTATCAATGTTTTAGTGAAATGCAGTCAACTCTGATTTATCCTTGAAAAAAATCTTAAAATCATCTTTGTGATGATGGACTTGTCTGTGACTTACCTCACCCTGTTAAGATCTCCCTTGTGTTCTCGGACTTGTAAGTGTTGAATAGCTTATATTTGGCTCTTAAGAGTGCAGTTTGTGAATGAAAACAAAAGGTTTTTTTTCCTTAGATACAGTGTCTTTTAGGAATACATAATTATTTTGAGATTCATCACTGCTGCTTTTTAATAACTTTATAGTGCTATACCATGTTTGGTTTTGTAACTATACAACAATTTATTGATCTTTTTTATTCATTCGGCTCTTGGTTGAATCCTTTCTTGAGCTGTTACATATTATGGATATGAGCATTTGATTCAATATGCTTACATTTTTAAATTCCTCTCGAGCCAGTAATTAAGTATATGTGAATGCTTCTATTTTTAAGAAAGTGTCAAACTGGTATAGATTGCTCTAGATCAGTGGTTCTCAACCTTTCTGATGCTGCAATTCTTTAATACAGTTCCTCATGCTGTGGTAACCCTCAACCATAGAATTATTTTTGTTGCTACTTCACAACTGTAATTTTGCTGCTGGTATGAATTGTAAATATTTGTGTTTTCCTATGGTCTTAGGTGACACCTGTGAAAGGGTCATTTGACTCCCAAAAGGGTCACGACCCATTGAGAACAACTGATGTAGACAGTGTATGAACATTCTTGCTAGTACTTGTGTGGTTAATGAGTTTGCTTTGAGCCATTTGAATAGCTGTATAATAACACACTGTATAGTCTTAATTGCTTTTTTCGTGTTTCATGATACTGAATATTTTTGTGTGTTTACTTGCCAAGTGTATTTTTTAAAACTTGTTTTTTTGCCTATTTTCAAGTGAAAATTCATGTTACTGTCCTTTTCATTAATAAATAGATGTACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030393:ENSMUST00000032551:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.234
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=6.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAGAGGCTCCTGTACCT
R:
CTGGGGAAGGACTTTGCTGAC
Band lengths:
342-1612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types