BtaINT0165471 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037981 | ZNF416
Description
zinc finger protein 416 [Source:HGNC Symbol;Acc:HGNC:20645]
Coordinates
chr18:64976079-64980645:-
Coord C1 exon
chr18:64980519-64980645
Coord A exon
chr18:64977650-64980518
Coord C2 exon
chr18:64976079-64977649
Length
2869 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
AAATATTTCTCTTCTTTCAGTTT
3' ss Score
8.55
Exon sequences
Seq C1 exon
GCCTGTGTGACCTTTGAGGACGTGGCCATTTACTTCTCCCAGGAGGAGTGGGGGCTCCTTGATGAAGTTCAGAGACACCTGTACTGCAAGGTGATGCTAGAGAACTTTGCACTGACAGCCTCGATGG
Seq A exon
GTAAGGCCCTCACCCCAGTGTACTGATCTGGGTCGTACTTTCTGTCCCCCAGAGGCAGCTCTGCTCTTTCCATAGTCAGACTATGGGCTCTGTTTACTTCCCCACTTTCTTGGCATATGTGGTGTGGGTGCCAGTGCTGAGCTGAGTGCACTGCCCCAAGTAGTTCTAAGTCTGTTGCCCAAGCTTGCAGGTGAGGATCTGGGATGTAGGAATTTGGCAGTCAGGCTAAAACAAGGCATCTTACCTTGTTTACCTCACCCTGGCAGAATGAATATCCCAGGTGTCATGACACCTGGTGTCCCAAGTCCTGATTCAATAATTTTAACAATAGGCATATAATATTTGACAAACTGTATATATGATATATAATTTTTAGTGATGTTATATATGGAGTCCTGATGGATGGGATCACAGCATTCAGTTCAGTTCAGTTCTGTTGCTCAGTCATGTCCGACTCTTTGCGACCTGATGAATCACAGCACGCCAGGACTCCCTGTCCATCACCAACTCCTGGAGTTCACTCAAGAGTCGGTGATGCCATCCATCCATTTCATCCTCTGTCATCCCCTTCTCTTCCTGCCCCCAATGCCTCCCAGCATCAGGGTCTTTTCCAATGAGTCAACTCTTCACATGAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAATGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTTGTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAGCACCACAGTTCAAAAGCATCAATTCTTCAGTGCTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACTATAGCCTTGACTAGACAGATCTTTGTTGGCAAAGTAATATCTCTGCTTTTCAATATACTATCTAGGTTGGTCATAACTTCCCTTCCAAGGTAAGCGTCTTTTAATTTCATGGCCGCAGTCACCATCTGCAGTGATTTTGGAGCCCCAAAATAAAGTCTGACACTGTTTCCAGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCAGATGCCATGATCTTTGTTTTCTGAATGCTGAGCTTTAAGCCAACTTTTTCACTCTGCCCTTTCACTTTCATCAAGAGGCTTTTTAGTTCCTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCCTATCTGAGGTTATTGGTATTTCTCCCGGCAATCTTGATTCTAGCTTCTGCTTCTTCCACCCCAGTATTTCTCATGATGTACTCTGCATATAAGTGAAATAAGCAGGGTGACAATATTCAGCCTTGGCATGCTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATATAGGTTTCTCAAAAGGCAGGTCAGGTGGCCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTAGAACTCTCTTGCTTTTTCCATGATCCAGCGGATGTTGGCAATTTGATCTCTGGTTTCTCTGCCTTTTCTAAAACCAACTTGAACATCTGGAAGTTCAGGGTTCATGTATTGCTGAAGCCTGGCTTGGAGAATTTTGAGTGTTACTTTACTAGTGTGTGTGATAAGTGCAATTGTGTAGTACTTTGAGCATTCTTTGGCATTGCCTTTCTTTGGGATTGGGATGAAAACTGACCTTTTCCAGTCTTGTGGCCACGAGTTCTAGTAATCCAACATGAGTCACCTTTTCTTTCTTTCTTGCTTTCTTGTTGCACCTCTAGTTCCTGCAAGTTGGAGCTGCTCTGTAGTTGTAGTGGATGGGCATTTCCTTGTGGTGGCTTCTCTTGTTATGGAGCACAGGCTCTAGGGCATGCGTGCTTCAGGTGTTGTGTACATGGGCTCTCTATTTGTGGCACACAGGCTCAGTGATTGTCATGCACAGGCTTAGTTGCCCAGTGGCATGTGGGATCTTAGTTCCAAGACCAGGGAATGACCCCACGTCCCCTGCATTGCAAGACAGATTCGTAACCACCAGACCACCAGAGAGGTCCCTAGCCTGTGATTTTCTTGTGTTGTAGTGTTCTTCTTTGGCTTTGGTATAAGGGTGATACTGGCTTTATAAAATGTGTTCCCTCCTCTTCAGTGTTTGTGTTTTGTTTTGTTTTGAGCATTGGTATTAAATGTAATGTTTCCACTTTCGTTTATAATTTTGAGTCCTCTCTCTTTTTTTTTATTACTCTAGAAGGTTTGTCAATTTTATCTTTTCAAAAAATTCTTAGTTTTCATCTTTTCTATTGTCTTTCTAGTCTCTATTTTATTTCCACTTTAATCTTTATTATTTCCCTCCTTCTGCTAACACTGAGTTCAGTTTGTTCTTCTTTTTTAATCTTTGAAGTGTGAAGGTAGGGTTATTTTAAGATTTTTCTTAGTGTATGTATCTGCTAAAACCTTCCCTTTTAGAACTACTTTTGCTGGGTCCCATAAGTTTTTTATCATATTTTGGTCAGAAAAGAGATTTGATATGATTTCAATTTCCTTAAATTGGTGAAGACTTGTTTTATAGCCTGCTCTATGATCTAATCTGGGGGATTATCCCTGCATTCTTGAGTAGTGTGTATTTTGCTGCTGGTTGATGAAATGTTCTGTATATGTCTGTTAGGTCTATTTGATTTATAGTGTTTAAGTCCAGTGTTTCTCTGGCCATGAAGGTTTCTTAAGATATCTAAATGTTGTATTATACAGAAAGTTAAAAGAAAAACAAAACATGATGAATACTCTCCTACCATAATCAGCATAATTCACAAATATTTCTCTTCTTTCAG
Seq C2 exon
TTTGTTTGCATGAAACACAGACTAAAGAGACACCTTCTGAGCAAAACGTTTCTCTAGAAGCTTTGTCACAGGTCAGGACTCCAAAGGTAGGTCCATTCACCGAGAATGCTCACCCCTGTGAGAAATGTGTCCCAATCCTGAAAGACATTTTGTACCCTGCTGATTTACCAGGGCAGAAACCATACTTTACTGGGGCATCTGCAAACCTACAACAGCTTCAGAAGCATTTCACTACAGAGAAAAGTGACGTGGATAAGGCAGCATTTGTAAAAAGCTGCATAGTCCAGGTGTCAGGGAATCCCTTCACCTGTAGGAAGGTTGGAATGGACTTACCAGGTACAGTGGGTCTCCTCCAGCACCAGATCACTTCCAATGGTGAGAAACCCAACAAAATCACCAAGTTTGGGGAGACTTTTAATGGTAGAAAAAGTCATTACAAATTGCGTGAATGTGGGAAAGCTACCAGCCACAAACACAATCTTGTTTACCACCTAAGAGTCTCTGCTAGAAAAAGAGTTTATGAGTTTAGCAAATATGGGAAAGCCATGCACTGTAAGTACTCACTTGTTCAGCTCCAGAGAGTCCGCACTGGAGAAAGGTCTTATGAGTGCAGTGAATGTGGAAAATCTTTTAGGCAACGAGCCACTCTTATTATACACCAGAGAGTTCACACTGGAGAAAGGCCTTATAAATGTGGTGAGTGTGGAAAGTCCTTTAGTCAGTGCTCCAATCTTATTGAACACTGCAGAATTCACAGTGGAGAGAGGCCTTTTGAGTGTGAGGAATGTGGGAAAACCTTTGGGTGCAAATCCAATCTTGTTCGGCACCGGAGAACCCACACTGGAGAAAAGCCTTATGAATGCAGCGAATGTGGGAAATTCTTTAGACAAAGCTTCACCTTGGTTCAACATCGGAGAATTCACACCACAGCAAGGCCTTATGTCTGTGTCCAGTGTGGGAAATCCTTTAGCCAAAGAGCCACTCTCATTCGACACCAGCGAGTTCACACTACTGAAAGGCCTTATGAGTGTGGGGAATGTGGGAAAGCTTTTGGATCCAAATCCAAACTTGAGCGACACAACAGAAGTCACACTGGAGAAAAGCCTTATGAGTGTGCTGAATGTGAAAAATCTTTCAGACAGAGTTACAGCCTCGTTGAACACCAGCGTATTCACAGTAGAACAAGGCCTTTTGAGTGTGGCCAGTGTGGGAAGTCCTTTAGCAGAAGAGCCATCTTCACTAAACACCAGAGAATTCACACTGGAGAAAGGCCTTATAAATGTGGTGAATGTGGGAAATCCTTTAGTCGAAGCACAAGCCTTATTCAGCACTGCAGTATTCACACTGGAGCCAGGCCTTATGAATGTGGGCAGTGTGGGAAATCCTTTAGGCAAAAGTCTGTTCTCATTCAACACCAGGTAGTTCACACTGGAGAAAGGCCTTACGAATGCAGTAAATGTGGCAAATCCTTTAGTCAACGTTCCAGCCTCAATCTCCACCGAAAATTTCACACTGTGGAGTGGCTCCATGAATGCAGGAAATATGGGAAATCCTTTACTCCAAACAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037981:ENSBTAT00000055561:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development