RnoINT0008784 @ rn6
Intron Retention
Gene
ENSRNOG00000058214 | AC098462.1
Description
NA
Coordinates
chr1:63299393-63300176:-
Coord C1 exon
chr1:63300053-63300176
Coord A exon
chr1:63299565-63300052
Coord C2 exon
chr1:63299393-63299564
Length
488 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TCTGCTTGTCTTTCTCTTAGGAT
3' ss Score
10.7
Exon sequences
Seq C1 exon
GACTTTGTCACCTTTAAGGATGTCGCCATCTTATTCTCCAGGGAGGAGTGGAGGCTCCTCAATAAGTCTCAGAAGCAACTGTGTGATGCTGGAGAACGTTACTTTGCACTTGTAACTTCATTGG
Seq A exon
GTAAGACACCATACCCACCCAGCCCATCCTTGAACTTGTCTGTACTTGTTTGTTTTTCCCATAGAGAAAGCTTTGCAATTTCCAGAGCAAGATGTTGGGTTCCATTAACTTCTCCACTGTATTCTTACTTATGTAAGAATTAGTTATGTGCCCTAACCTAAACAGTACCCAGACTAGTCTGGGCCTTAGGAACCCTGATCAGTAAAATAAGACTCTTCTTATTTATATACTTCATTTTGTGGTTACTGTAACCTAGATATGTGGGACTGTAGAAGAGCATTTCTTTTCCTCTTTGTAAATGCTAACTCTTTATGACTGCTACAGTTGGAAATGACAGGCATTGGCATGGTTGATATTTATTTACTCAAGACAACAACATGTTGCCAATACTTCCTTCAATTATATCATTTTCCATCCTGGGCATTTTATAAGCTGAGTCTTTTGGGCCAATCCCGGAGGCTCATCTACTCTGCTTGTCTTTCTCTTAG
Seq C2 exon
GATTTGCTTCAAGATGGTTCTGTGCAGATTTCTGGCAAGGAGCCTGGGGATAGCTCTGGATGCTTTACAGTGAGGTGCAATCACAGAGGACCTTGATGAGTTGTCCAGTCAAAAAGGGAGACTTGTTTCCTGTTGCTCTGTACTACCTGCTGTGTGGCATTTTCCACTACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058214:ENSRNOT00000088236:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACCTTTAAGGATGTCGCC
R:
TGCCACACAGCAGGTAGTACA
Band lengths:
278-766
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]