HsaINT0187172 @ hg19
Intron Retention
Gene
ENSG00000083817 | ZNF416
Description
zinc finger protein 416 [Source:HGNC Symbol;Acc:20645]
Coordinates
chr19:58082934-58087298:-
Coord C1 exon
chr19:58087172-58087298
Coord A exon
chr19:58085070-58087171
Coord C2 exon
chr19:58082934-58085069
Length
2102 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CAGTGTTTCTCTGCTTTCAGTTT
3' ss Score
7.95
Exon sequences
Seq C1 exon
GGCTGTGTGACCTTTGAGGACGTGGCCATTTACTTCTCCCAGGAAGAATGGGGGCTCCTTGATGAGGCTCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAACTTTGCACTTATAACTGCGCTGG
Seq A exon
GTAAGGCCCTCACACCCACTCTCGTGTCCTGGTCTTCGTCTATCCTCTTTTTCCTCAGAGGCAGCTCTGCCGGACCGTGGGCTTTGCTGACTTCCCCACTGTCTTGGCGTATGTGCTGTGGTGTAAGGAATGAAATCATTGCACTCCTTAATCAGCCCTGACATTTGCTGTCCCAAAATGCACAGGGATGGGTCTGGCTGTTAGGTGTCTTGAGTCAGCCTAATGCATCTCCGTTTACTTCTTCACTTCCTCTTTGGGTGGCTGTGTCCATATTCATGGTACTTTGTGTCTCAAATTCTGCCTCCTAGATGACATTTCCTTTGACTACCTGTGTTAGGAATTTGCAGAATTTTCCTCATCAGTATTTACATGGACCATGAGCTGTGGTTGCCAGAACCTCCTTCAAGGATCTGTGTGATATTAATTTTCTTTCTTGTGTTCTCAAGGCTGCTGACTTGCTCTGGGCCACTGCAGGATACTCACCTGTCCCAGCTTTCCCTTAGGACTTGCTTCATTCAGGTCCCAAGTAGTGGCACATCTAGAGGTGGTGGGAAAGCCCTGGTTGTTGGAAAGGGTGAAGATGGGAATATGGCTTCAGAGGAAGCCTGGCCTCAGTCAGTGGCACCTGGGTGAGGACATGGCATCCAGCCTGTTTTCTAATCTTACCAGGAATTTGCCCTGTGTCATCCAGAGTTTGGTGCTAATGCCACTGGACACATCTCATTTCTATGTTTTCTTCCTCTTCCTTGACACTTTGCTGGCTTATTGCTTCATCTGGGACATCCGGCCTCGTGCTGCCCCCATCTTCCTGCCCTCCATGTGTCACCAGTTTCTCTGCACTGCCCCCCAGCATGTTTTCCAACACTGACCCACTCACGATATGTTGTGAGTTGTGCACATGCCAATTAAATATTTCTTGAACACAAGATCGCAATTGGAATCTCCCACTCACTTCCAATTGCATTATCTTGGGCCCGAATAATGCCAGCTTTCAGCACAGCATACACGTGCCACCAGCTGACAAGATCTTGCCACAGGATTTGGCAAAAGAATAGATTGGAGACCCTGCCTCTCCTTGTGTACTGTACCCCATTCTTACGTCCTGTGTTTGGTGAGGCCTCCCCATTTTGTGATCTTTAGAGGCCCACTACTGCCAAGCAGCCTCTTTCTTATCCTGCTTTCAGTTCCTCAATATTGCTTCAAAGCAATACTGTGAATTCATTCCTTGATGTATATGTGAAGGTGCTTCCCATTTCCTGTTATGTACCCACAGGATTTTAATTAATGGAGGTAGTAGAGTGCCAATACAGAGAGGTTAATGTCAGTGACATAGGAATTTATCACCTGCAGTAGCAAGAGCATGTGAACACCATGCCATGCAGGGCCACATGAGGAAGTGCTCAGTGGTCAGAAGGTAGAAGCAAGAGAGGAGGGAAAATATTAAGCCACAGCCTTTATTGGGGTTTCTGCAGGTAACACAAGACATAATAAACAGTTTAGGATTGGGTAATTTGAGTAGTTTGCTTTGGGGCAAAGGGGCTCACTAGGCGTAGTTGTCTCCTGCCTGACCTTGGGATGACTAGAGCAGAGGAATATTAGCTCCTGAAGCATCCAAGTCACATAGAAAATGTGATTGGGAGTATGGGCTCTGGATTGATGGTGTATTTGTTATGCTCCTTGCTGAGCCCTTTGCTATCTCTTTAAGAGTTGGCTCACTCTGGAAGCACCATTCTCTCCCCAGCCAGCAATGTTTTTTATTTTGTTTTGTTTTGTTTTGTTTTTGAGACAGTTTCGCTTTGTCTCCCAGGCTGGAGTGCAGTGGTGCGATCTGGGCTCACTGCAACCTCTGCCTCCCGGATTCAAGCAATTCTTGTGCCTCAGCCTCTTGAGTAGCACCCACCACCACGCCTGGATAATTTTTTGTATTTTTAGTAGAGCCAGGGTTTCACCATATTGCCCAGACTGGTCTCAAACTCCTGAGCTCAGGCCAGCAAAGTTTTTAAGATGTCAGAACACCAATTATTCAGAAAATAGTTTTTTAAATGACTAATACACTCCCATCATAGTCAACGTGCATTTCATCAGTGTTTCTCTGCTTTCAG
Seq C2 exon
TTTGTTGGCATGGGATGGAGGATGAAGAGACACCTGAGCAAAGTGTTTCTGTAGAAGGAGTACCTCAGGTCAGGACTCCAGAGGCCAGTCCATCCACCCAGAAGATTCAATCCTGTGACATGTGTGTCCCATTCCTGACCGACATTTTGCACCTGACCGATTTGCCTGGGCAGGAACTATACTTGACTGGGGCATGTGCGGTCTTTCACCAGGACCAGAAGCATCATAGTGCAGAGAAACCCTTGGAAAGTGACATGGACAAGGCCTCATTTGTGCAGTGCTGCCTGTTCCATGAGTCAGGAATGCCTTTCACCAGCAGTGAGGTTGGGAAGGACTTCCTAGCCCCATTGGGCATTCTTCAGCCGCAAGCTATTGCTAACTATGAGAAGCCAAACAAAATCAGCAAATGTGAGGAGGCCTTTCATGTTGGAATAAGTCATTACAAGTGGAGTCAATGCAGGAGAGAGTCCAGCCACAAACACACTTTTTTTCACCCTAGAGTCTGCACTGGAAAAAGGCTTTATGAATCTAGCAAATGTGGGAAAGCCTGCTGCTGTGAGTGCTCCCTTGTTCAGCTGCAAAGAGTCCACCCTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGGAAATCTTTTAGCCAAACCTCTCATCTGAATGATCATCGGAGAATCCACACTGGAGAAAGGCCTTATGTGTGTGGTCAGTGTGGGAAATCATTTAGCCAAAGAGCCACCCTCATTAAACATCACAGAGTTCACACTGGAGAAAGGCCTTACGAGTGTGGTGAATGTGGGAAATCTTTTAGCCAAAGTTCCAACCTTATTGAACATTGCAGAATTCACACTGGAGAAAGGCCTTATGAGTGTGATGAATGTGGAAAAGCCTTTGGGTCCAAATCCACTCTTGTTCGACACCAGAGAACTCACACAGGAGAAAAGCCATATGAGTGTGGTGAATGTGGGAAATTATTCAGACAAAGCTTCAGCCTTGTTGTACACCAGAGAATTCACACTACAGCAAGGCCTTATGAGTGTGGCCAGTGTGGGAAATCATTTAGCCTAAAGTGTGGCCTCATTCAGCACCAGTTAATTCACAGTGGAGCTAGGCCCTTTGAGTGTGATGAGTGCGGAAAATCCTTTAGCCAAAGAACCACCCTCAATAAACACCACAAAGTTCACACTGCAGAAAGGCCTTATGTATGTGGGGAATGTGGGAAAGCTTTTATGTTCAAATCTAAACTTGTTAGGCACCAGAGAACTCACACTGGAGAAAGGCCTTTTGAGTGCAGTGAATGTGGGAAATTTTTTAGACAAAGCTATACCCTCGTTGAACACCAGAAAATTCACACTGGATTAAGGCCTTACGACTGTGGACAGTGCGGGAAATCCTTTATCCAAAAGTCTAGCCTCATTCAACACCAAGTGGTTCACACAGGAGAAAGGCCATATGAGTGTGGCAAATGTGGGAAGTCCTTTACACAACACTCTGGCCTCATTCTCCACCGAAAATCTCACACTGTGGAGAGGCCTCGTGACAGCAGCAAATGTGGAAAACCCTACAGCCCAAGATCTAACATTGTTTAACTCTTGAAACTCCAAACCTGAGAAAAGCCTTAGACCTGCAGGGAATGTGCCATGTCTTTCTTCAGTGTTATGGCTATAGAGAGCCTTTGTGAAGGAGCCGTCTGCCTAAAGTTAAACCTCATACTTCTAGACCTCCCGATGGGTCAGACTCCCATTAGTTCCAGGCATATGTGTCTTGCAGGAGCTCCTTTGCATGTTCTAAACTGCTGGAGGCCTTTGCCAGAGTTAAATCATTAGTCACCCTTGCATACTAAGGCGAGGCAGATACACCTGTGTTCTCCCAACCCTTGGAGGAAATTCCTTGAGCAGTCTGAGCCTTTAAGGGGAATTCCTTCCCTTTTCTGACTGATTACAGCATACATCTGACCAGTTTTGGCCAGAAGGGCCCAGCCTGGGTTCTGCTGGAAGCTGATGTGGAAGGCTTCCCTTCATGGAAATTCTTGTTTTCACACAACACTTGGTAGTTTTTCCAGCCTCCAAGTCACCACCTAGTAACTGGCTGCCTCACATTGCTCTGGTTTGTGTGGTAATAAAGGCCTTATTTTTAAATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000083817-ZNF416:NM_017879:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)